miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10295 5' -54.8 NC_002687.1 + 18479 0.67 0.986131
Target:  5'- ---aGCCGcUCGU-GCuaGUGCUCCUGUa -3'
miRNA:   3'- caugCGGC-AGCAuCGc-CAUGAGGACG- -5'
10295 5' -54.8 NC_002687.1 + 25788 1.12 0.005776
Target:  5'- uGUACGCCGUCGUAGCGGUACUCCUGCa -3'
miRNA:   3'- -CAUGCGGCAGCAUCGCCAUGAGGACG- -5'
10295 5' -54.8 NC_002687.1 + 58594 0.67 0.9827
Target:  5'- -gACGCCaUCGU--CGGUGCUCCguuauucaugUGCa -3'
miRNA:   3'- caUGCGGcAGCAucGCCAUGAGG----------ACG- -5'
10295 5' -54.8 NC_002687.1 + 63746 0.69 0.947715
Target:  5'- -cACGCCGaCG-GGUGGUAg-CCUGCg -3'
miRNA:   3'- caUGCGGCaGCaUCGCCAUgaGGACG- -5'
10295 5' -54.8 NC_002687.1 + 71756 0.69 0.947715
Target:  5'- -gACGCCGUau--GCGGUggcaccGCUCaCUGCg -3'
miRNA:   3'- caUGCGGCAgcauCGCCA------UGAG-GACG- -5'
10295 5' -54.8 NC_002687.1 + 71821 0.72 0.862258
Target:  5'- -aGCGCCGUCGUgcuAGCGGcACUCgUcGUc -3'
miRNA:   3'- caUGCGGCAGCA---UCGCCaUGAGgA-CG- -5'
10295 5' -54.8 NC_002687.1 + 81560 0.74 0.790155
Target:  5'- --uUGCCGgCGUAGCGGUGC-CCgagGCc -3'
miRNA:   3'- cauGCGGCaGCAUCGCCAUGaGGa--CG- -5'
10295 5' -54.8 NC_002687.1 + 85091 0.66 0.990269
Target:  5'- --gUGCCGUCGUuuuccauGCGGauuCUCCauUGCu -3'
miRNA:   3'- cauGCGGCAGCAu------CGCCau-GAGG--ACG- -5'
10295 5' -54.8 NC_002687.1 + 87545 0.67 0.980762
Target:  5'- gGUGCGCCcgacGUUGUGGCGGggguUACcgggCUGCa -3'
miRNA:   3'- -CAUGCGG----CAGCAUCGCC----AUGag--GACG- -5'
10295 5' -54.8 NC_002687.1 + 87710 0.67 0.986131
Target:  5'- -aACGCCGggCGU-GUGGcGCUgaCCUGCc -3'
miRNA:   3'- caUGCGGCa-GCAuCGCCaUGA--GGACG- -5'
10295 5' -54.8 NC_002687.1 + 93318 0.66 0.99337
Target:  5'- uUACGCCGaUGacGGCGGUuguguuACUCUUGUc -3'
miRNA:   3'- cAUGCGGCaGCa-UCGCCA------UGAGGACG- -5'
10295 5' -54.8 NC_002687.1 + 113086 0.77 0.630155
Target:  5'- -aACGCCGUCGcguucAGCGGUgGCUCCgUGUg -3'
miRNA:   3'- caUGCGGCAGCa----UCGCCA-UGAGG-ACG- -5'
10295 5' -54.8 NC_002687.1 + 114067 0.7 0.91323
Target:  5'- gGU-CGCCGUCGUGGUGGUggcuaaaaaacuuACUUCgUGUu -3'
miRNA:   3'- -CAuGCGGCAGCAUCGCCA-------------UGAGG-ACG- -5'
10295 5' -54.8 NC_002687.1 + 126789 0.66 0.988882
Target:  5'- cUACGCUGgcaagaaUCaaAGUGGUACcuUCCUGCg -3'
miRNA:   3'- cAUGCGGC-------AGcaUCGCCAUG--AGGACG- -5'
10295 5' -54.8 NC_002687.1 + 128700 0.67 0.980762
Target:  5'- uUAUGCCGUugaUGUAGCaGGaGCagagCCUGCu -3'
miRNA:   3'- cAUGCGGCA---GCAUCG-CCaUGa---GGACG- -5'
10295 5' -54.8 NC_002687.1 + 141598 0.66 0.990269
Target:  5'- -gACGUCGaCGcGGCcGUGCUCCgcgGCa -3'
miRNA:   3'- caUGCGGCaGCaUCGcCAUGAGGa--CG- -5'
10295 5' -54.8 NC_002687.1 + 146244 0.68 0.962423
Target:  5'- -gGCGCUGU-GUGGUGGUgaugagguACUCgUGCu -3'
miRNA:   3'- caUGCGGCAgCAUCGCCA--------UGAGgACG- -5'
10295 5' -54.8 NC_002687.1 + 167499 0.72 0.839705
Target:  5'- aGUAUGUCGUCGUAggcGCGGUGugaUCCguUGCg -3'
miRNA:   3'- -CAUGCGGCAGCAU---CGCCAUg--AGG--ACG- -5'
10295 5' -54.8 NC_002687.1 + 205432 0.66 0.991408
Target:  5'- --cCGCCGUCGUAGUcaccgcugaaggGGUuCUCagUGCu -3'
miRNA:   3'- cauGCGGCAGCAUCG------------CCAuGAGg-ACG- -5'
10295 5' -54.8 NC_002687.1 + 209058 0.67 0.984487
Target:  5'- -aACGUCGUCGUGGUcGUcgucgucaccGCUaCCUGUg -3'
miRNA:   3'- caUGCGGCAGCAUCGcCA----------UGA-GGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.