miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10295 5' -54.8 NC_002687.1 + 167499 0.72 0.839705
Target:  5'- aGUAUGUCGUCGUAggcGCGGUGugaUCCguUGCg -3'
miRNA:   3'- -CAUGCGGCAGCAU---CGCCAUg--AGG--ACG- -5'
10295 5' -54.8 NC_002687.1 + 313255 0.66 0.992439
Target:  5'- ---gGCUGUCGUGGUGGuguUugUCC-GCc -3'
miRNA:   3'- caugCGGCAGCAUCGCC---AugAGGaCG- -5'
10295 5' -54.8 NC_002687.1 + 205432 0.66 0.991408
Target:  5'- --cCGCCGUCGUAGUcaccgcugaaggGGUuCUCagUGCu -3'
miRNA:   3'- cauGCGGCAGCAUCG------------CCAuGAGg-ACG- -5'
10295 5' -54.8 NC_002687.1 + 295167 0.66 0.990269
Target:  5'- -gGCGCCGgugCGU-GCGGUcgucuUUCgUGCg -3'
miRNA:   3'- caUGCGGCa--GCAuCGCCAu----GAGgACG- -5'
10295 5' -54.8 NC_002687.1 + 126789 0.66 0.988882
Target:  5'- cUACGCUGgcaagaaUCaaAGUGGUACcuUCCUGCg -3'
miRNA:   3'- cAUGCGGC-------AGcaUCGCCAUG--AGGACG- -5'
10295 5' -54.8 NC_002687.1 + 18479 0.67 0.986131
Target:  5'- ---aGCCGcUCGU-GCuaGUGCUCCUGUa -3'
miRNA:   3'- caugCGGC-AGCAuCGc-CAUGAGGACG- -5'
10295 5' -54.8 NC_002687.1 + 308729 0.66 0.993101
Target:  5'- cGUACGCaccucgcuaccgguCGUCGU-GCGacgACUCUUGCc -3'
miRNA:   3'- -CAUGCG--------------GCAGCAuCGCca-UGAGGACG- -5'
10295 5' -54.8 NC_002687.1 + 312087 0.66 0.992439
Target:  5'- -aGCGCCGcUUGcacuguGUGGUGCUguUCUGCa -3'
miRNA:   3'- caUGCGGC-AGCau----CGCCAUGA--GGACG- -5'
10295 5' -54.8 NC_002687.1 + 309541 0.66 0.988882
Target:  5'- gGUACGcCCGUcaacgucauggaaCGUcGGCGGUGCcgCCcGCg -3'
miRNA:   3'- -CAUGC-GGCA-------------GCA-UCGCCAUGa-GGaCG- -5'
10295 5' -54.8 NC_002687.1 + 323450 0.67 0.9827
Target:  5'- --gUGCCGUUcuuGCGGUACUCgaGUg -3'
miRNA:   3'- cauGCGGCAGcauCGCCAUGAGgaCG- -5'
10295 5' -54.8 NC_002687.1 + 307526 0.69 0.947715
Target:  5'- -cACGCCG-CGUgauguggcAGCGGUACaUCCcgugUGCu -3'
miRNA:   3'- caUGCGGCaGCA--------UCGCCAUG-AGG----ACG- -5'
10295 5' -54.8 NC_002687.1 + 210026 0.66 0.99337
Target:  5'- ---gGCaGUCGUGGCaguGGUGCagCUGCa -3'
miRNA:   3'- caugCGgCAGCAUCG---CCAUGagGACG- -5'
10295 5' -54.8 NC_002687.1 + 312827 0.68 0.976405
Target:  5'- aUACgGCCGUCGccGCGG-AUUCCagUGCu -3'
miRNA:   3'- cAUG-CGGCAGCauCGCCaUGAGG--ACG- -5'
10295 5' -54.8 NC_002687.1 + 209933 0.66 0.992439
Target:  5'- gGUGC-CCGUgGUGGCGGUGgUgCCguaugUGCc -3'
miRNA:   3'- -CAUGcGGCAgCAUCGCCAUgA-GG-----ACG- -5'
10295 5' -54.8 NC_002687.1 + 93318 0.66 0.99337
Target:  5'- uUACGCCGaUGacGGCGGUuguguuACUCUUGUc -3'
miRNA:   3'- cAUGCGGCaGCa-UCGCCA------UGAGGACG- -5'
10295 5' -54.8 NC_002687.1 + 330586 0.66 0.992439
Target:  5'- -gGCaGCCGUCGUGGCGauucacGUACguggCaUGCa -3'
miRNA:   3'- caUG-CGGCAGCAUCGC------CAUGa---GgACG- -5'
10295 5' -54.8 NC_002687.1 + 263519 0.68 0.968574
Target:  5'- -gACGCCGcUCGUucgauuacuucGGCGGa--UCCUGUa -3'
miRNA:   3'- caUGCGGC-AGCA-----------UCGCCaugAGGACG- -5'
10295 5' -54.8 NC_002687.1 + 87545 0.67 0.980762
Target:  5'- gGUGCGCCcgacGUUGUGGCGGggguUACcgggCUGCa -3'
miRNA:   3'- -CAUGCGG----CAGCAUCGCC----AUGag--GACG- -5'
10295 5' -54.8 NC_002687.1 + 128700 0.67 0.980762
Target:  5'- uUAUGCCGUugaUGUAGCaGGaGCagagCCUGCu -3'
miRNA:   3'- cAUGCGGCA---GCAUCG-CCaUGa---GGACG- -5'
10295 5' -54.8 NC_002687.1 + 58594 0.67 0.9827
Target:  5'- -gACGCCaUCGU--CGGUGCUCCguuauucaugUGCa -3'
miRNA:   3'- caUGCGGcAGCAucGCCAUGAGG----------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.