Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10295 | 5' | -54.8 | NC_002687.1 | + | 325836 | 0.71 | 0.902153 |
Target: 5'- uUGCGuUCGUCGUGGCcgacACUCCUGUg -3' miRNA: 3'- cAUGC-GGCAGCAUCGcca-UGAGGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 128700 | 0.67 | 0.980762 |
Target: 5'- uUAUGCCGUugaUGUAGCaGGaGCagagCCUGCu -3' miRNA: 3'- cAUGCGGCA---GCAUCG-CCaUGa---GGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 87545 | 0.67 | 0.980762 |
Target: 5'- gGUGCGCCcgacGUUGUGGCGGggguUACcgggCUGCa -3' miRNA: 3'- -CAUGCGG----CAGCAUCGCC----AUGag--GACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 263519 | 0.68 | 0.968574 |
Target: 5'- -gACGCCGcUCGUucgauuacuucGGCGGa--UCCUGUa -3' miRNA: 3'- caUGCGGC-AGCA-----------UCGCCaugAGGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 248879 | 0.68 | 0.962423 |
Target: 5'- -cGCGCCGUCcaggagguGCGcGUugUCCUGa -3' miRNA: 3'- caUGCGGCAGcau-----CGC-CAugAGGACg -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 146244 | 0.68 | 0.962423 |
Target: 5'- -gGCGCUGU-GUGGUGGUgaugagguACUCgUGCu -3' miRNA: 3'- caUGCGGCAgCAUCGCCA--------UGAGgACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 71756 | 0.69 | 0.947715 |
Target: 5'- -gACGCCGUau--GCGGUggcaccGCUCaCUGCg -3' miRNA: 3'- caUGCGGCAgcauCGCCA------UGAG-GACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 63746 | 0.69 | 0.947715 |
Target: 5'- -cACGCCGaCG-GGUGGUAg-CCUGCg -3' miRNA: 3'- caUGCGGCaGCaUCGCCAUgaGGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 114067 | 0.7 | 0.91323 |
Target: 5'- gGU-CGCCGUCGUGGUGGUggcuaaaaaacuuACUUCgUGUu -3' miRNA: 3'- -CAuGCGGCAGCAUCGCCA-------------UGAGG-ACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 58594 | 0.67 | 0.9827 |
Target: 5'- -gACGCCaUCGU--CGGUGCUCCguuauucaugUGCa -3' miRNA: 3'- caUGCGGcAGCAucGCCAUGAGG----------ACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 333579 | 0.67 | 0.984487 |
Target: 5'- -aACGCCG-CGUGGuCGGaUGCa-CUGCa -3' miRNA: 3'- caUGCGGCaGCAUC-GCC-AUGagGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 209058 | 0.67 | 0.984487 |
Target: 5'- -aACGUCGUCGUGGUcGUcgucgucaccGCUaCCUGUg -3' miRNA: 3'- caUGCGGCAGCAUCGcCA----------UGA-GGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 324013 | 0.66 | 0.991833 |
Target: 5'- cGUGC-CCGUCGUuugucgguguguacGGCGGUACaggucuauaaaccuUCCcGCc -3' miRNA: 3'- -CAUGcGGCAGCA--------------UCGCCAUG--------------AGGaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 324397 | 0.66 | 0.991833 |
Target: 5'- cGUGC-CCGUCGUuugucgguguguacGGCGGUACaggucuauaaaccuUCCcGCc -3' miRNA: 3'- -CAUGcGGCAGCA--------------UCGCCAUG--------------AGGaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 324780 | 0.66 | 0.991833 |
Target: 5'- cGUGC-CCGUCGUuugucgguguguacGGCGGUACaggucuauaaaccuUCCcGCc -3' miRNA: 3'- -CAUGcGGCAGCA--------------UCGCCAUG--------------AGGaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 325164 | 0.66 | 0.991833 |
Target: 5'- cGUGC-CCGUCGUuugucgguguguacGGCGGUACaggucuauaaaccuUCCcGCc -3' miRNA: 3'- -CAUGcGGCAGCA--------------UCGCCAUG--------------AGGaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 85091 | 0.66 | 0.990269 |
Target: 5'- --gUGCCGUCGUuuuccauGCGGauuCUCCauUGCu -3' miRNA: 3'- cauGCGGCAGCAu------CGCCau-GAGG--ACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 264351 | 0.66 | 0.990269 |
Target: 5'- cUACaCCGgggcUCGUaAGCGGcgACUUCUGCa -3' miRNA: 3'- cAUGcGGC----AGCA-UCGCCa-UGAGGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 141598 | 0.66 | 0.990269 |
Target: 5'- -gACGUCGaCGcGGCcGUGCUCCgcgGCa -3' miRNA: 3'- caUGCGGCaGCaUCGcCAUGAGGa--CG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 87710 | 0.67 | 0.986131 |
Target: 5'- -aACGCCGggCGU-GUGGcGCUgaCCUGCc -3' miRNA: 3'- caUGCGGCa-GCAuCGCCaUGA--GGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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