Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10295 | 5' | -54.8 | NC_002687.1 | + | 333579 | 0.67 | 0.984487 |
Target: 5'- -aACGCCG-CGUGGuCGGaUGCa-CUGCa -3' miRNA: 3'- caUGCGGCaGCAUC-GCC-AUGagGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 331077 | 0.66 | 0.99337 |
Target: 5'- ---aGgCGUCGUGcGCGGcaguucuguUACUCUUGCu -3' miRNA: 3'- caugCgGCAGCAU-CGCC---------AUGAGGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 330586 | 0.66 | 0.992439 |
Target: 5'- -gGCaGCCGUCGUGGCGauucacGUACguggCaUGCa -3' miRNA: 3'- caUG-CGGCAGCAUCGC------CAUGa---GgACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 325836 | 0.71 | 0.902153 |
Target: 5'- uUGCGuUCGUCGUGGCcgacACUCCUGUg -3' miRNA: 3'- cAUGC-GGCAGCAUCGcca-UGAGGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 325164 | 0.66 | 0.991833 |
Target: 5'- cGUGC-CCGUCGUuugucgguguguacGGCGGUACaggucuauaaaccuUCCcGCc -3' miRNA: 3'- -CAUGcGGCAGCA--------------UCGCCAUG--------------AGGaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 324780 | 0.66 | 0.991833 |
Target: 5'- cGUGC-CCGUCGUuugucgguguguacGGCGGUACaggucuauaaaccuUCCcGCc -3' miRNA: 3'- -CAUGcGGCAGCA--------------UCGCCAUG--------------AGGaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 324397 | 0.66 | 0.991833 |
Target: 5'- cGUGC-CCGUCGUuugucgguguguacGGCGGUACaggucuauaaaccuUCCcGCc -3' miRNA: 3'- -CAUGcGGCAGCA--------------UCGCCAUG--------------AGGaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 324013 | 0.66 | 0.991833 |
Target: 5'- cGUGC-CCGUCGUuugucgguguguacGGCGGUACaggucuauaaaccuUCCcGCc -3' miRNA: 3'- -CAUGcGGCAGCA--------------UCGCCAUG--------------AGGaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 323450 | 0.67 | 0.9827 |
Target: 5'- --gUGCCGUUcuuGCGGUACUCgaGUg -3' miRNA: 3'- cauGCGGCAGcauCGCCAUGAGgaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 313255 | 0.66 | 0.992439 |
Target: 5'- ---gGCUGUCGUGGUGGuguUugUCC-GCc -3' miRNA: 3'- caugCGGCAGCAUCGCC---AugAGGaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 312827 | 0.68 | 0.976405 |
Target: 5'- aUACgGCCGUCGccGCGG-AUUCCagUGCu -3' miRNA: 3'- cAUG-CGGCAGCauCGCCaUGAGG--ACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 312087 | 0.66 | 0.992439 |
Target: 5'- -aGCGCCGcUUGcacuguGUGGUGCUguUCUGCa -3' miRNA: 3'- caUGCGGC-AGCau----CGCCAUGA--GGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 309541 | 0.66 | 0.988882 |
Target: 5'- gGUACGcCCGUcaacgucauggaaCGUcGGCGGUGCcgCCcGCg -3' miRNA: 3'- -CAUGC-GGCA-------------GCA-UCGCCAUGa-GGaCG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 308729 | 0.66 | 0.993101 |
Target: 5'- cGUACGCaccucgcuaccgguCGUCGU-GCGacgACUCUUGCc -3' miRNA: 3'- -CAUGCG--------------GCAGCAuCGCca-UGAGGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 307526 | 0.69 | 0.947715 |
Target: 5'- -cACGCCG-CGUgauguggcAGCGGUACaUCCcgugUGCu -3' miRNA: 3'- caUGCGGCaGCA--------UCGCCAUG-AGG----ACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 295167 | 0.66 | 0.990269 |
Target: 5'- -gGCGCCGgugCGU-GCGGUcgucuUUCgUGCg -3' miRNA: 3'- caUGCGGCa--GCAuCGCCAu----GAGgACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 264351 | 0.66 | 0.990269 |
Target: 5'- cUACaCCGgggcUCGUaAGCGGcgACUUCUGCa -3' miRNA: 3'- cAUGcGGC----AGCA-UCGCCa-UGAGGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 263519 | 0.68 | 0.968574 |
Target: 5'- -gACGCCGcUCGUucgauuacuucGGCGGa--UCCUGUa -3' miRNA: 3'- caUGCGGC-AGCA-----------UCGCCaugAGGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 255690 | 0.72 | 0.839705 |
Target: 5'- cUGCGCCaUCGUgucGGCuccGUACUCCUGUg -3' miRNA: 3'- cAUGCGGcAGCA---UCGc--CAUGAGGACG- -5' |
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10295 | 5' | -54.8 | NC_002687.1 | + | 248879 | 0.68 | 0.962423 |
Target: 5'- -cGCGCCGUCcaggagguGCGcGUugUCCUGa -3' miRNA: 3'- caUGCGGCAGcau-----CGC-CAugAGGACg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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