miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10297 5' -48.6 NC_002687.1 + 33043 1.09 0.027342
Target:  5'- gAACGAAACCACAACCUCAUCACUCACa -3'
miRNA:   3'- -UUGCUUUGGUGUUGGAGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 127669 0.79 0.819065
Target:  5'- aGACGAAgcuuuuGCCACGcuguUCUCAUCGCUCACu -3'
miRNA:   3'- -UUGCUU------UGGUGUu---GGAGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 69675 0.79 0.827709
Target:  5'- -cCGAAACCGuCAcCCUCGUCugUCGCg -3'
miRNA:   3'- uuGCUUUGGU-GUuGGAGUAGugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 72514 0.76 0.915218
Target:  5'- aGAUGAAcACCaACGACCUCGUCGUUCGCa -3'
miRNA:   3'- -UUGCUU-UGG-UGUUGGAGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 253353 0.76 0.915218
Target:  5'- uACGAAGCCAUcaAACCU--UCGCUCGCg -3'
miRNA:   3'- uUGCUUUGGUG--UUGGAguAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 96854 0.75 0.954632
Target:  5'- cGCGGAgaaCGCGGCCcgCGUCGCUCGCg -3'
miRNA:   3'- uUGCUUug-GUGUUGGa-GUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 253214 0.74 0.974366
Target:  5'- cACGAGACCGuc-CCUCGUC-CUCGCg -3'
miRNA:   3'- uUGCUUUGGUguuGGAGUAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 84418 0.73 0.981457
Target:  5'- gAACGGAACCACGACCacCGUCAauacCACc -3'
miRNA:   3'- -UUGCUUUGGUGUUGGa-GUAGUga--GUG- -5'
10297 5' -48.6 NC_002687.1 + 330292 0.72 0.986965
Target:  5'- cGAUGAAgacGCCACucaguCCUCAUCGUUCACa -3'
miRNA:   3'- -UUGCUU---UGGUGuu---GGAGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 134143 0.72 0.988488
Target:  5'- cACGcuuGCCACAACCUCGUC-C-CACc -3'
miRNA:   3'- uUGCuu-UGGUGUUGGAGUAGuGaGUG- -5'
10297 5' -48.6 NC_002687.1 + 298409 0.71 0.993249
Target:  5'- cGGCGGcGGCCGCGGCCUUAUCAauugggCGCu -3'
miRNA:   3'- -UUGCU-UUGGUGUUGGAGUAGUga----GUG- -5'
10297 5' -48.6 NC_002687.1 + 321053 0.7 0.996836
Target:  5'- -gUGAAACCugGcCCUaCAUCAgUCACa -3'
miRNA:   3'- uuGCUUUGGugUuGGA-GUAGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 180924 0.7 0.996836
Target:  5'- aGACGGAcgaACCACucauCCUCGUCguGCUUGCa -3'
miRNA:   3'- -UUGCUU---UGGUGuu--GGAGUAG--UGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 200334 0.7 0.997317
Target:  5'- cACGAgcuGACCACucGCCUgGcCACUCGCu -3'
miRNA:   3'- uUGCU---UUGGUGu-UGGAgUaGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 78140 0.7 0.997317
Target:  5'- cGACGAGAUgACggUCaggUCGUCugUCACg -3'
miRNA:   3'- -UUGCUUUGgUGuuGG---AGUAGugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 326365 0.7 0.997735
Target:  5'- aAGCGAcguCCACGACCUCuAUUAUgggCACu -3'
miRNA:   3'- -UUGCUuu-GGUGUUGGAG-UAGUGa--GUG- -5'
10297 5' -48.6 NC_002687.1 + 40725 0.7 0.997735
Target:  5'- --gGAGGCCACcuGCCUCAuucUCGgUCGCg -3'
miRNA:   3'- uugCUUUGGUGu-UGGAGU---AGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 246919 0.7 0.997735
Target:  5'- -gUGAAACCuCGACCUCuUC-CUCGCc -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGuAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 107974 0.7 0.997735
Target:  5'- cGCGAuACCugAuCCUCA-CugUCACg -3'
miRNA:   3'- uUGCUuUGGugUuGGAGUaGugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 145639 0.7 0.997886
Target:  5'- -cCGAAGCCugGaucgcaggcagagucACCUCcagaagaacGUCGCUCACg -3'
miRNA:   3'- uuGCUUUGGugU---------------UGGAG---------UAGUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.