miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10297 5' -48.6 NC_002687.1 + 72514 0.76 0.915218
Target:  5'- aGAUGAAcACCaACGACCUCGUCGUUCGCa -3'
miRNA:   3'- -UUGCUU-UGG-UGUUGGAGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 248255 0.67 0.99993
Target:  5'- -cUGGAACC-CAACUUCGUCGaUCAUg -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGUAGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 234097 0.66 0.999945
Target:  5'- gAACGAcACCGCAAUuaUUCGUCGCaaggagcaggagaUCGCg -3'
miRNA:   3'- -UUGCUuUGGUGUUG--GAGUAGUG-------------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 170999 0.66 0.999978
Target:  5'- gGACGAGacGCCGCu-CUUCGUCGCgugCAa -3'
miRNA:   3'- -UUGCUU--UGGUGuuGGAGUAGUGa--GUg -5'
10297 5' -48.6 NC_002687.1 + 40725 0.7 0.997735
Target:  5'- --gGAGGCCACcuGCCUCAuucUCGgUCGCg -3'
miRNA:   3'- uugCUUUGGUGu-UGGAGU---AGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 326365 0.7 0.997735
Target:  5'- aAGCGAcguCCACGACCUCuAUUAUgggCACu -3'
miRNA:   3'- -UUGCUuu-GGUGUUGGAG-UAGUGa--GUG- -5'
10297 5' -48.6 NC_002687.1 + 297428 0.69 0.998906
Target:  5'- --gGAGACagGCAugCUCAUCGCgacgCACa -3'
miRNA:   3'- uugCUUUGg-UGUugGAGUAGUGa---GUG- -5'
10297 5' -48.6 NC_002687.1 + 157737 0.69 0.9991
Target:  5'- uGCGGAAUCACAAUCUCGUU-CUUAa -3'
miRNA:   3'- uUGCUUUGGUGUUGGAGUAGuGAGUg -5'
10297 5' -48.6 NC_002687.1 + 275802 0.69 0.9991
Target:  5'- cGGCGcGACCGCGGCCU--UCACguUCACc -3'
miRNA:   3'- -UUGCuUUGGUGUUGGAguAGUG--AGUG- -5'
10297 5' -48.6 NC_002687.1 + 262722 0.67 0.999926
Target:  5'- -cCGAGACCACAAUCUaccagacgaucgAUCGCgagCACg -3'
miRNA:   3'- uuGCUUUGGUGUUGGAg-----------UAGUGa--GUG- -5'
10297 5' -48.6 NC_002687.1 + 66641 0.68 0.999516
Target:  5'- cGACGGuuuGGCCACG--CUCAUCGCUCu- -3'
miRNA:   3'- -UUGCU---UUGGUGUugGAGUAGUGAGug -5'
10297 5' -48.6 NC_002687.1 + 274805 0.69 0.9991
Target:  5'- gGugGAAACCACG-CCUUucgAUCAgUUCACa -3'
miRNA:   3'- -UugCUUUGGUGUuGGAG---UAGU-GAGUG- -5'
10297 5' -48.6 NC_002687.1 + 253214 0.74 0.974366
Target:  5'- cACGAGACCGuc-CCUCGUC-CUCGCg -3'
miRNA:   3'- uUGCUUUGGUguuGGAGUAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 65399 0.67 0.999806
Target:  5'- uGGCGGAAaagauCAACCUCAUCA-UCGCu -3'
miRNA:   3'- -UUGCUUUggu--GUUGGAGUAGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 84418 0.73 0.981457
Target:  5'- gAACGGAACCACGACCacCGUCAauacCACc -3'
miRNA:   3'- -UUGCUUUGGUGUUGGa-GUAGUga--GUG- -5'
10297 5' -48.6 NC_002687.1 + 318996 0.69 0.9991
Target:  5'- -gUGGAACCuCGACCUCuUC-CUCGCc -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGuAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 262837 0.67 0.999882
Target:  5'- cAACGAGACCAUcuACUUCaAUCACgccaaaaucuUCACa -3'
miRNA:   3'- -UUGCUUUGGUGu-UGGAG-UAGUG----------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 29482 0.67 0.999937
Target:  5'- uAACGGcauucgcuguccgguGAUCACAGCCUCcgCaaacuGCUCGCc -3'
miRNA:   3'- -UUGCU---------------UUGGUGUUGGAGuaG-----UGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 78140 0.7 0.997317
Target:  5'- cGACGAGAUgACggUCaggUCGUCugUCACg -3'
miRNA:   3'- -UUGCUUUGgUGuuGG---AGUAGugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 316668 0.69 0.998678
Target:  5'- cGCGAGacACCACGGa-UgGUCGCUCACa -3'
miRNA:   3'- uUGCUU--UGGUGUUggAgUAGUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.