miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10297 5' -48.6 NC_002687.1 + 275802 0.69 0.9991
Target:  5'- cGGCGcGACCGCGGCCU--UCACguUCACc -3'
miRNA:   3'- -UUGCuUUGGUGUUGGAguAGUG--AGUG- -5'
10297 5' -48.6 NC_002687.1 + 234097 0.66 0.999945
Target:  5'- gAACGAcACCGCAAUuaUUCGUCGCaaggagcaggagaUCGCg -3'
miRNA:   3'- -UUGCUuUGGUGUUG--GAGUAGUG-------------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 84418 0.73 0.981457
Target:  5'- gAACGGAACCACGACCacCGUCAauacCACc -3'
miRNA:   3'- -UUGCUUUGGUGUUGGa-GUAGUga--GUG- -5'
10297 5' -48.6 NC_002687.1 + 83638 0.68 0.999516
Target:  5'- cAGCGAGGCUgcuguCAACC-CGUCACccuUCACg -3'
miRNA:   3'- -UUGCUUUGGu----GUUGGaGUAGUG---AGUG- -5'
10297 5' -48.6 NC_002687.1 + 72242 0.67 0.999909
Target:  5'- aGGCGAcGGCCACggUCguagCGUCugUCAg -3'
miRNA:   3'- -UUGCU-UUGGUGuuGGa---GUAGugAGUg -5'
10297 5' -48.6 NC_002687.1 + 292655 0.67 0.999937
Target:  5'- cACGAAagcgGCCGCGGCgUUCGuuugauguaccacauUCGCUCGCg -3'
miRNA:   3'- uUGCUU----UGGUGUUG-GAGU---------------AGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 196171 0.66 0.999978
Target:  5'- cGACGAAGCUcuACAACCuggcggagaagaUCAUCACaaACu -3'
miRNA:   3'- -UUGCUUUGG--UGUUGG------------AGUAGUGagUG- -5'
10297 5' -48.6 NC_002687.1 + 253353 0.76 0.915218
Target:  5'- uACGAAGCCAUcaAACCU--UCGCUCGCg -3'
miRNA:   3'- uUGCUUUGGUG--UUGGAguAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 96854 0.75 0.954632
Target:  5'- cGCGGAgaaCGCGGCCcgCGUCGCUCGCg -3'
miRNA:   3'- uUGCUUug-GUGUUGGa-GUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 330292 0.72 0.986965
Target:  5'- cGAUGAAgacGCCACucaguCCUCAUCGUUCACa -3'
miRNA:   3'- -UUGCUU---UGGUGuu---GGAGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 227373 0.68 0.999742
Target:  5'- aGGCGAAGCCGCuccgucgucguCCUCGUCGg-CGCu -3'
miRNA:   3'- -UUGCUUUGGUGuu---------GGAGUAGUgaGUG- -5'
10297 5' -48.6 NC_002687.1 + 82105 0.67 0.999806
Target:  5'- uGCGGccaGAcCCAC-ACCUCAUCACaccucaUCACa -3'
miRNA:   3'- uUGCU---UU-GGUGuUGGAGUAGUG------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 212648 0.67 0.999806
Target:  5'- -uCGAcGCCGCAAUCUC--CACUCAa -3'
miRNA:   3'- uuGCUuUGGUGUUGGAGuaGUGAGUg -5'
10297 5' -48.6 NC_002687.1 + 218072 0.67 0.999848
Target:  5'- aAGCGAuacGCCGCaAACCUCucuuUCAUcCACg -3'
miRNA:   3'- -UUGCUu--UGGUG-UUGGAGu---AGUGaGUG- -5'
10297 5' -48.6 NC_002687.1 + 246919 0.7 0.997735
Target:  5'- -gUGAAACCuCGACCUCuUC-CUCGCc -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGuAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 200334 0.7 0.997317
Target:  5'- cACGAgcuGACCACucGCCUgGcCACUCGCu -3'
miRNA:   3'- uUGCU---UUGGUGu-UGGAgUaGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 180924 0.7 0.996836
Target:  5'- aGACGGAcgaACCACucauCCUCGUCguGCUUGCa -3'
miRNA:   3'- -UUGCUU---UGGUGuu--GGAGUAG--UGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 321053 0.7 0.996836
Target:  5'- -gUGAAACCugGcCCUaCAUCAgUCACa -3'
miRNA:   3'- uuGCUUUGGugUuGGA-GUAGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 298409 0.71 0.993249
Target:  5'- cGGCGGcGGCCGCGGCCUUAUCAauugggCGCu -3'
miRNA:   3'- -UUGCU-UUGGUGUUGGAGUAGUga----GUG- -5'
10297 5' -48.6 NC_002687.1 + 134143 0.72 0.988488
Target:  5'- cACGcuuGCCACAACCUCGUC-C-CACc -3'
miRNA:   3'- uUGCuu-UGGUGUUGGAGUAGuGaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.