miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10297 5' -48.6 NC_002687.1 + 123766 0.68 0.999401
Target:  5'- cACGAAugCuuuCGACCaUGUCACUCAUc -3'
miRNA:   3'- uUGCUUugGu--GUUGGaGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 127669 0.79 0.819065
Target:  5'- aGACGAAgcuuuuGCCACGcuguUCUCAUCGCUCACu -3'
miRNA:   3'- -UUGCUU------UGGUGUu---GGAGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 134143 0.72 0.988488
Target:  5'- cACGcuuGCCACAACCUCGUC-C-CACc -3'
miRNA:   3'- uUGCuu-UGGUGUUGGAGUAGuGaGUG- -5'
10297 5' -48.6 NC_002687.1 + 145639 0.7 0.997886
Target:  5'- -cCGAAGCCugGaucgcaggcagagucACCUCcagaagaacGUCGCUCACg -3'
miRNA:   3'- uuGCUUUGGugU---------------UGGAG---------UAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 157737 0.69 0.9991
Target:  5'- uGCGGAAUCACAAUCUCGUU-CUUAa -3'
miRNA:   3'- uUGCUUUGGUGUUGGAGUAGuGAGUg -5'
10297 5' -48.6 NC_002687.1 + 157751 0.66 0.999978
Target:  5'- aGACGAAggacuucacGCCACGGCUUCcgUuCUCAUc -3'
miRNA:   3'- -UUGCUU---------UGGUGUUGGAGuaGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 170999 0.66 0.999978
Target:  5'- gGACGAGacGCCGCu-CUUCGUCGCgugCAa -3'
miRNA:   3'- -UUGCUU--UGGUGuuGGAGUAGUGa--GUg -5'
10297 5' -48.6 NC_002687.1 + 180924 0.7 0.996836
Target:  5'- aGACGGAcgaACCACucauCCUCGUCguGCUUGCa -3'
miRNA:   3'- -UUGCUU---UGGUGuu--GGAGUAG--UGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 196171 0.66 0.999978
Target:  5'- cGACGAAGCUcuACAACCuggcggagaagaUCAUCACaaACu -3'
miRNA:   3'- -UUGCUUUGG--UGUUGG------------AGUAGUGagUG- -5'
10297 5' -48.6 NC_002687.1 + 197430 0.67 0.999882
Target:  5'- --gGAGGCCACGuGCCUCAUU-CUCGg -3'
miRNA:   3'- uugCUUUGGUGU-UGGAGUAGuGAGUg -5'
10297 5' -48.6 NC_002687.1 + 200334 0.7 0.997317
Target:  5'- cACGAgcuGACCACucGCCUgGcCACUCGCu -3'
miRNA:   3'- uUGCU---UUGGUGu-UGGAgUaGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 211561 0.7 0.998097
Target:  5'- -uCGGGucuccACUGCGGCCaugCAUCGCUCACg -3'
miRNA:   3'- uuGCUU-----UGGUGUUGGa--GUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 212648 0.67 0.999806
Target:  5'- -uCGAcGCCGCAAUCUC--CACUCAa -3'
miRNA:   3'- uuGCUuUGGUGUUGGAGuaGUGAGUg -5'
10297 5' -48.6 NC_002687.1 + 218072 0.67 0.999848
Target:  5'- aAGCGAuacGCCGCaAACCUCucuuUCAUcCACg -3'
miRNA:   3'- -UUGCUu--UGGUG-UUGGAGu---AGUGaGUG- -5'
10297 5' -48.6 NC_002687.1 + 223021 0.67 0.999882
Target:  5'- --gGAGGCCACGuGCCUCAUU-CUCGg -3'
miRNA:   3'- uugCUUUGGUGU-UGGAGUAGuGAGUg -5'
10297 5' -48.6 NC_002687.1 + 227373 0.68 0.999742
Target:  5'- aGGCGAAGCCGCuccgucgucguCCUCGUCGg-CGCu -3'
miRNA:   3'- -UUGCUUUGGUGuu---------GGAGUAGUgaGUG- -5'
10297 5' -48.6 NC_002687.1 + 234097 0.66 0.999945
Target:  5'- gAACGAcACCGCAAUuaUUCGUCGCaaggagcaggagaUCGCg -3'
miRNA:   3'- -UUGCUuUGGUGUUG--GAGUAGUG-------------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 246919 0.7 0.997735
Target:  5'- -gUGAAACCuCGACCUCuUC-CUCGCc -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGuAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 248255 0.67 0.99993
Target:  5'- -cUGGAACC-CAACUUCGUCGaUCAUg -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGUAGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 253214 0.74 0.974366
Target:  5'- cACGAGACCGuc-CCUCGUC-CUCGCg -3'
miRNA:   3'- uUGCUUUGGUguuGGAGUAGuGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.