miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10297 5' -48.6 NC_002687.1 + 3051 0.66 0.99996
Target:  5'- cGGCGAuguaCAUAGCCguugaucCGUCGCUCAUg -3'
miRNA:   3'- -UUGCUuug-GUGUUGGa------GUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 20336 0.66 0.999978
Target:  5'- cGACGAAGCUcuACAACCuggcggagaagaUCAUCACaaACu -3'
miRNA:   3'- -UUGCUUUGG--UGUUGG------------AGUAGUGagUG- -5'
10297 5' -48.6 NC_002687.1 + 29482 0.67 0.999937
Target:  5'- uAACGGcauucgcuguccgguGAUCACAGCCUCcgCaaacuGCUCGCc -3'
miRNA:   3'- -UUGCU---------------UUGGUGUUGGAGuaG-----UGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 33043 1.09 0.027342
Target:  5'- gAACGAAACCACAACCUCAUCACUCACa -3'
miRNA:   3'- -UUGCUUUGGUGUUGGAGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 40725 0.7 0.997735
Target:  5'- --gGAGGCCACcuGCCUCAuucUCGgUCGCg -3'
miRNA:   3'- uugCUUUGGUGu-UGGAGU---AGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 65399 0.67 0.999806
Target:  5'- uGGCGGAAaagauCAACCUCAUCA-UCGCu -3'
miRNA:   3'- -UUGCUUUggu--GUUGGAGUAGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 66641 0.68 0.999516
Target:  5'- cGACGGuuuGGCCACG--CUCAUCGCUCu- -3'
miRNA:   3'- -UUGCU---UUGGUGUugGAGUAGUGAGug -5'
10297 5' -48.6 NC_002687.1 + 69675 0.79 0.827709
Target:  5'- -cCGAAACCGuCAcCCUCGUCugUCGCg -3'
miRNA:   3'- uuGCUUUGGU-GUuGGAGUAGugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 72242 0.67 0.999909
Target:  5'- aGGCGAcGGCCACggUCguagCGUCugUCAg -3'
miRNA:   3'- -UUGCU-UUGGUGuuGGa---GUAGugAGUg -5'
10297 5' -48.6 NC_002687.1 + 72514 0.76 0.915218
Target:  5'- aGAUGAAcACCaACGACCUCGUCGUUCGCa -3'
miRNA:   3'- -UUGCUU-UGG-UGUUGGAGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 75530 0.68 0.999401
Target:  5'- uGACGGAucuACC-CGACCUCGUCAUcguUCGu -3'
miRNA:   3'- -UUGCUU---UGGuGUUGGAGUAGUG---AGUg -5'
10297 5' -48.6 NC_002687.1 + 78140 0.7 0.997317
Target:  5'- cGACGAGAUgACggUCaggUCGUCugUCACg -3'
miRNA:   3'- -UUGCUUUGgUGuuGG---AGUAGugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 81820 0.66 0.999947
Target:  5'- uGACGAGgcgGCCAC-ACUUCGUgCugUCAUc -3'
miRNA:   3'- -UUGCUU---UGGUGuUGGAGUA-GugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 82105 0.67 0.999806
Target:  5'- uGCGGccaGAcCCAC-ACCUCAUCACaccucaUCACa -3'
miRNA:   3'- uUGCU---UU-GGUGuUGGAGUAGUG------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 83638 0.68 0.999516
Target:  5'- cAGCGAGGCUgcuguCAACC-CGUCACccuUCACg -3'
miRNA:   3'- -UUGCUUUGGu----GUUGGaGUAGUG---AGUG- -5'
10297 5' -48.6 NC_002687.1 + 84418 0.73 0.981457
Target:  5'- gAACGGAACCACGACCacCGUCAauacCACc -3'
miRNA:   3'- -UUGCUUUGGUGUUGGa-GUAGUga--GUG- -5'
10297 5' -48.6 NC_002687.1 + 90039 0.69 0.998381
Target:  5'- cACGGcauccauGAUCGCGGCCUCcgUugUCGCg -3'
miRNA:   3'- uUGCU-------UUGGUGUUGGAGuaGugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 94519 0.67 0.999882
Target:  5'- cGAUGAAGCCAUcGCCacCGUCACUguaGCa -3'
miRNA:   3'- -UUGCUUUGGUGuUGGa-GUAGUGAg--UG- -5'
10297 5' -48.6 NC_002687.1 + 96854 0.75 0.954632
Target:  5'- cGCGGAgaaCGCGGCCcgCGUCGCUCGCg -3'
miRNA:   3'- uUGCUUug-GUGUUGGa-GUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 107974 0.7 0.997735
Target:  5'- cGCGAuACCugAuCCUCA-CugUCACg -3'
miRNA:   3'- uUGCUuUGGugUuGGAGUaGugAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.