miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10297 5' -48.6 NC_002687.1 + 330292 0.72 0.986965
Target:  5'- cGAUGAAgacGCCACucaguCCUCAUCGUUCACa -3'
miRNA:   3'- -UUGCUU---UGGUGuu---GGAGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 326365 0.7 0.997735
Target:  5'- aAGCGAcguCCACGACCUCuAUUAUgggCACu -3'
miRNA:   3'- -UUGCUuu-GGUGUUGGAG-UAGUGa--GUG- -5'
10297 5' -48.6 NC_002687.1 + 321053 0.7 0.996836
Target:  5'- -gUGAAACCugGcCCUaCAUCAgUCACa -3'
miRNA:   3'- uuGCUUUGGugUuGGA-GUAGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 318996 0.69 0.9991
Target:  5'- -gUGGAACCuCGACCUCuUC-CUCGCc -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGuAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 316668 0.69 0.998678
Target:  5'- cGCGAGacACCACGGa-UgGUCGCUCACa -3'
miRNA:   3'- uUGCUU--UGGUGUUggAgUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 300578 0.66 0.99997
Target:  5'- aAGCGguACCAacgguGCCUCAUCGCg--- -3'
miRNA:   3'- -UUGCuuUGGUgu---UGGAGUAGUGagug -5'
10297 5' -48.6 NC_002687.1 + 298409 0.71 0.993249
Target:  5'- cGGCGGcGGCCGCGGCCUUAUCAauugggCGCu -3'
miRNA:   3'- -UUGCU-UUGGUGUUGGAGUAGUga----GUG- -5'
10297 5' -48.6 NC_002687.1 + 297428 0.69 0.998906
Target:  5'- --gGAGACagGCAugCUCAUCGCgacgCACa -3'
miRNA:   3'- uugCUUUGg-UGUugGAGUAGUGa---GUG- -5'
10297 5' -48.6 NC_002687.1 + 292655 0.67 0.999937
Target:  5'- cACGAAagcgGCCGCGGCgUUCGuuugauguaccacauUCGCUCGCg -3'
miRNA:   3'- uUGCUU----UGGUGUUG-GAGU---------------AGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 284076 0.66 0.999947
Target:  5'- --gGAAACCACcggaUUgAUCGCUCACg -3'
miRNA:   3'- uugCUUUGGUGuug-GAgUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 275802 0.69 0.9991
Target:  5'- cGGCGcGACCGCGGCCU--UCACguUCACc -3'
miRNA:   3'- -UUGCuUUGGUGUUGGAguAGUG--AGUG- -5'
10297 5' -48.6 NC_002687.1 + 274805 0.69 0.9991
Target:  5'- gGugGAAACCACG-CCUUucgAUCAgUUCACa -3'
miRNA:   3'- -UugCUUUGGUGUuGGAG---UAGU-GAGUG- -5'
10297 5' -48.6 NC_002687.1 + 262837 0.67 0.999882
Target:  5'- cAACGAGACCAUcuACUUCaAUCACgccaaaaucuUCACa -3'
miRNA:   3'- -UUGCUUUGGUGu-UGGAG-UAGUG----------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 262722 0.67 0.999926
Target:  5'- -cCGAGACCACAAUCUaccagacgaucgAUCGCgagCACg -3'
miRNA:   3'- uuGCUUUGGUGUUGGAg-----------UAGUGa--GUG- -5'
10297 5' -48.6 NC_002687.1 + 260101 0.69 0.9991
Target:  5'- uGCGAAACCAacGCCUUAUCGucgauCUCAa -3'
miRNA:   3'- uUGCUUUGGUguUGGAGUAGU-----GAGUg -5'
10297 5' -48.6 NC_002687.1 + 253353 0.76 0.915218
Target:  5'- uACGAAGCCAUcaAACCU--UCGCUCGCg -3'
miRNA:   3'- uUGCUUUGGUG--UUGGAguAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 253214 0.74 0.974366
Target:  5'- cACGAGACCGuc-CCUCGUC-CUCGCg -3'
miRNA:   3'- uUGCUUUGGUguuGGAGUAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 248255 0.67 0.99993
Target:  5'- -cUGGAACC-CAACUUCGUCGaUCAUg -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGUAGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 246919 0.7 0.997735
Target:  5'- -gUGAAACCuCGACCUCuUC-CUCGCc -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGuAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 234097 0.66 0.999945
Target:  5'- gAACGAcACCGCAAUuaUUCGUCGCaaggagcaggagaUCGCg -3'
miRNA:   3'- -UUGCUuUGGUGUUG--GAGUAGUG-------------AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.