miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10297 5' -48.6 NC_002687.1 + 107974 0.7 0.997735
Target:  5'- cGCGAuACCugAuCCUCA-CugUCACg -3'
miRNA:   3'- uUGCUuUGGugUuGGAGUaGugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 82105 0.67 0.999806
Target:  5'- uGCGGccaGAcCCAC-ACCUCAUCACaccucaUCACa -3'
miRNA:   3'- uUGCU---UU-GGUGuUGGAGUAGUG------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 227373 0.68 0.999742
Target:  5'- aGGCGAAGCCGCuccgucgucguCCUCGUCGg-CGCu -3'
miRNA:   3'- -UUGCUUUGGUGuu---------GGAGUAGUgaGUG- -5'
10297 5' -48.6 NC_002687.1 + 83638 0.68 0.999516
Target:  5'- cAGCGAGGCUgcuguCAACC-CGUCACccuUCACg -3'
miRNA:   3'- -UUGCUUUGGu----GUUGGaGUAGUG---AGUG- -5'
10297 5' -48.6 NC_002687.1 + 123766 0.68 0.999401
Target:  5'- cACGAAugCuuuCGACCaUGUCACUCAUc -3'
miRNA:   3'- uUGCUUugGu--GUUGGaGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 260101 0.69 0.9991
Target:  5'- uGCGAAACCAacGCCUUAUCGucgauCUCAa -3'
miRNA:   3'- uUGCUUUGGUguUGGAGUAGU-----GAGUg -5'
10297 5' -48.6 NC_002687.1 + 90039 0.69 0.998381
Target:  5'- cACGGcauccauGAUCGCGGCCUCcgUugUCGCg -3'
miRNA:   3'- uUGCU-------UUGGUGUUGGAGuaGugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 211561 0.7 0.998097
Target:  5'- -uCGGGucuccACUGCGGCCaugCAUCGCUCACg -3'
miRNA:   3'- uuGCUU-----UGGUGUUGGa--GUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 145639 0.7 0.997886
Target:  5'- -cCGAAGCCugGaucgcaggcagagucACCUCcagaagaacGUCGCUCACg -3'
miRNA:   3'- uuGCUUUGGugU---------------UGGAG---------UAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 212648 0.67 0.999806
Target:  5'- -uCGAcGCCGCAAUCUC--CACUCAa -3'
miRNA:   3'- uuGCUuUGGUGUUGGAGuaGUGAGUg -5'
10297 5' -48.6 NC_002687.1 + 218072 0.67 0.999848
Target:  5'- aAGCGAuacGCCGCaAACCUCucuuUCAUcCACg -3'
miRNA:   3'- -UUGCUu--UGGUG-UUGGAGu---AGUGaGUG- -5'
10297 5' -48.6 NC_002687.1 + 223021 0.67 0.999882
Target:  5'- --gGAGGCCACGuGCCUCAUU-CUCGg -3'
miRNA:   3'- uugCUUUGGUGU-UGGAGUAGuGAGUg -5'
10297 5' -48.6 NC_002687.1 + 157751 0.66 0.999978
Target:  5'- aGACGAAggacuucacGCCACGGCUUCcgUuCUCAUc -3'
miRNA:   3'- -UUGCUU---------UGGUGUUGGAGuaGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 196171 0.66 0.999978
Target:  5'- cGACGAAGCUcuACAACCuggcggagaagaUCAUCACaaACu -3'
miRNA:   3'- -UUGCUUUGG--UGUUGG------------AGUAGUGagUG- -5'
10297 5' -48.6 NC_002687.1 + 300578 0.66 0.99997
Target:  5'- aAGCGguACCAacgguGCCUCAUCGCg--- -3'
miRNA:   3'- -UUGCuuUGGUgu---UGGAGUAGUGagug -5'
10297 5' -48.6 NC_002687.1 + 81820 0.66 0.999947
Target:  5'- uGACGAGgcgGCCAC-ACUUCGUgCugUCAUc -3'
miRNA:   3'- -UUGCUU---UGGUGuUGGAGUA-GugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 292655 0.67 0.999937
Target:  5'- cACGAAagcgGCCGCGGCgUUCGuuugauguaccacauUCGCUCGCg -3'
miRNA:   3'- uUGCUU----UGGUGUUG-GAGU---------------AGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 72242 0.67 0.999909
Target:  5'- aGGCGAcGGCCACggUCguagCGUCugUCAg -3'
miRNA:   3'- -UUGCU-UUGGUGuuGGa---GUAGugAGUg -5'
10297 5' -48.6 NC_002687.1 + 94519 0.67 0.999882
Target:  5'- cGAUGAAGCCAUcGCCacCGUCACUguaGCa -3'
miRNA:   3'- -UUGCUUUGGUGuUGGa-GUAGUGAg--UG- -5'
10297 5' -48.6 NC_002687.1 + 197430 0.67 0.999882
Target:  5'- --gGAGGCCACGuGCCUCAUU-CUCGg -3'
miRNA:   3'- uugCUUUGGUGU-UGGAGUAGuGAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.