miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10297 5' -48.6 NC_002687.1 + 212648 0.67 0.999806
Target:  5'- -uCGAcGCCGCAAUCUC--CACUCAa -3'
miRNA:   3'- uuGCUuUGGUGUUGGAGuaGUGAGUg -5'
10297 5' -48.6 NC_002687.1 + 82105 0.67 0.999806
Target:  5'- uGCGGccaGAcCCAC-ACCUCAUCACaccucaUCACa -3'
miRNA:   3'- uUGCU---UU-GGUGuUGGAGUAGUG------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 227373 0.68 0.999742
Target:  5'- aGGCGAAGCCGCuccgucgucguCCUCGUCGg-CGCu -3'
miRNA:   3'- -UUGCUUUGGUGuu---------GGAGUAGUgaGUG- -5'
10297 5' -48.6 NC_002687.1 + 66641 0.68 0.999516
Target:  5'- cGACGGuuuGGCCACG--CUCAUCGCUCu- -3'
miRNA:   3'- -UUGCU---UUGGUGUugGAGUAGUGAGug -5'
10297 5' -48.6 NC_002687.1 + 83638 0.68 0.999516
Target:  5'- cAGCGAGGCUgcuguCAACC-CGUCACccuUCACg -3'
miRNA:   3'- -UUGCUUUGGu----GUUGGaGUAGUG---AGUG- -5'
10297 5' -48.6 NC_002687.1 + 75530 0.68 0.999401
Target:  5'- uGACGGAucuACC-CGACCUCGUCAUcguUCGu -3'
miRNA:   3'- -UUGCUU---UGGuGUUGGAGUAGUG---AGUg -5'
10297 5' -48.6 NC_002687.1 + 123766 0.68 0.999401
Target:  5'- cACGAAugCuuuCGACCaUGUCACUCAUc -3'
miRNA:   3'- uUGCUUugGu--GUUGGaGUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 275802 0.69 0.9991
Target:  5'- cGGCGcGACCGCGGCCU--UCACguUCACc -3'
miRNA:   3'- -UUGCuUUGGUGUUGGAguAGUG--AGUG- -5'
10297 5' -48.6 NC_002687.1 + 260101 0.69 0.9991
Target:  5'- uGCGAAACCAacGCCUUAUCGucgauCUCAa -3'
miRNA:   3'- uUGCUUUGGUguUGGAGUAGU-----GAGUg -5'
10297 5' -48.6 NC_002687.1 + 274805 0.69 0.9991
Target:  5'- gGugGAAACCACG-CCUUucgAUCAgUUCACa -3'
miRNA:   3'- -UugCUUUGGUGUuGGAG---UAGU-GAGUG- -5'
10297 5' -48.6 NC_002687.1 + 318996 0.69 0.9991
Target:  5'- -gUGGAACCuCGACCUCuUC-CUCGCc -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGuAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 157737 0.69 0.9991
Target:  5'- uGCGGAAUCACAAUCUCGUU-CUUAa -3'
miRNA:   3'- uUGCUUUGGUGUUGGAGUAGuGAGUg -5'
10297 5' -48.6 NC_002687.1 + 297428 0.69 0.998906
Target:  5'- --gGAGACagGCAugCUCAUCGCgacgCACa -3'
miRNA:   3'- uugCUUUGg-UGUugGAGUAGUGa---GUG- -5'
10297 5' -48.6 NC_002687.1 + 316668 0.69 0.998678
Target:  5'- cGCGAGacACCACGGa-UgGUCGCUCACa -3'
miRNA:   3'- uUGCUU--UGGUGUUggAgUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 90039 0.69 0.998381
Target:  5'- cACGGcauccauGAUCGCGGCCUCcgUugUCGCg -3'
miRNA:   3'- uUGCU-------UUGGUGUUGGAGuaGugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 211561 0.7 0.998097
Target:  5'- -uCGGGucuccACUGCGGCCaugCAUCGCUCACg -3'
miRNA:   3'- uuGCUU-----UGGUGUUGGa--GUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 145639 0.7 0.997886
Target:  5'- -cCGAAGCCugGaucgcaggcagagucACCUCcagaagaacGUCGCUCACg -3'
miRNA:   3'- uuGCUUUGGugU---------------UGGAG---------UAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 246919 0.7 0.997735
Target:  5'- -gUGAAACCuCGACCUCuUC-CUCGCc -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGuAGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 40725 0.7 0.997735
Target:  5'- --gGAGGCCACcuGCCUCAuucUCGgUCGCg -3'
miRNA:   3'- uugCUUUGGUGu-UGGAGU---AGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 326365 0.7 0.997735
Target:  5'- aAGCGAcguCCACGACCUCuAUUAUgggCACu -3'
miRNA:   3'- -UUGCUuu-GGUGUUGGAG-UAGUGa--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.