miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1030 3' -50.5 NC_000924.1 + 40185 0.66 0.948054
Target:  5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3'
miRNA:   3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5'
1030 3' -50.5 NC_000924.1 + 26144 0.66 0.943711
Target:  5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3'
miRNA:   3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5'
1030 3' -50.5 NC_000924.1 + 60410 0.66 0.943214
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
1030 3' -50.5 NC_000924.1 + 23777 0.66 0.938615
Target:  5'- -aACCAGCAgaaugcccGCAUUcGCCGGUAuaACGg -3'
miRNA:   3'- ggUGGUUGU--------UGUAA-UGGCCGUcgUGC- -5'
1030 3' -50.5 NC_000924.1 + 51467 0.66 0.938615
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
1030 3' -50.5 NC_000924.1 + 36029 0.66 0.938615
Target:  5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3'
miRNA:   3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5'
1030 3' -50.5 NC_000924.1 + 32771 0.67 0.927561
Target:  5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3'
miRNA:   3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5'
1030 3' -50.5 NC_000924.1 + 41121 0.67 0.927561
Target:  5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3'
miRNA:   3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5'
1030 3' -50.5 NC_000924.1 + 61146 0.67 0.927561
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
1030 3' -50.5 NC_000924.1 + 49597 0.67 0.921601
Target:  5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3'
miRNA:   3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5'
1030 3' -50.5 NC_000924.1 + 15228 0.67 0.921601
Target:  5'- gCGCCG--GACGUUGCCGcGCuaacaGGCGCa -3'
miRNA:   3'- gGUGGUugUUGUAAUGGC-CG-----UCGUGc -5'
1030 3' -50.5 NC_000924.1 + 28238 0.67 0.915352
Target:  5'- -aGCCAAa---AUUugUGGCGGCACa -3'
miRNA:   3'- ggUGGUUguugUAAugGCCGUCGUGc -5'
1030 3' -50.5 NC_000924.1 + 36899 0.67 0.915352
Target:  5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3'
miRNA:   3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5'
1030 3' -50.5 NC_000924.1 + 24019 0.67 0.908817
Target:  5'- gCACCAaacuguGCGGCGUgauuUACCGGC-GUACc -3'
miRNA:   3'- gGUGGU------UGUUGUA----AUGGCCGuCGUGc -5'
1030 3' -50.5 NC_000924.1 + 25200 0.67 0.908817
Target:  5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5'
1030 3' -50.5 NC_000924.1 + 49414 0.67 0.907475
Target:  5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3'
miRNA:   3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5'
1030 3' -50.5 NC_000924.1 + 50586 0.67 0.901996
Target:  5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3'
miRNA:   3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5'
1030 3' -50.5 NC_000924.1 + 32865 0.68 0.894894
Target:  5'- gCGCCuguuCAGCAgacACCGGCguuuaaGGCACa -3'
miRNA:   3'- gGUGGuu--GUUGUaa-UGGCCG------UCGUGc -5'
1030 3' -50.5 NC_000924.1 + 50674 0.68 0.887515
Target:  5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3'
miRNA:   3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5'
1030 3' -50.5 NC_000924.1 + 29484 0.68 0.879863
Target:  5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3'
miRNA:   3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.