Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 4069 | 0.72 | 0.694318 |
Target: 5'- gCCGCCAuacCggUAUUGCa-GCGGCACGa -3' miRNA: 3'- -GGUGGUu--GuuGUAAUGgcCGUCGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 14531 | 0.83 | 0.182176 |
Target: 5'- aUCACCAACAACA-UGCCGGaaCAGUACGa -3' miRNA: 3'- -GGUGGUUGUUGUaAUGGCC--GUCGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 15228 | 0.67 | 0.921601 |
Target: 5'- gCGCCG--GACGUUGCCGcGCuaacaGGCGCa -3' miRNA: 3'- gGUGGUugUUGUAAUGGC-CG-----UCGUGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 21208 | 0.69 | 0.837753 |
Target: 5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3' miRNA: 3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 23777 | 0.66 | 0.938615 |
Target: 5'- -aACCAGCAgaaugcccGCAUUcGCCGGUAuaACGg -3' miRNA: 3'- ggUGGUUGU--------UGUAA-UGGCCGUcgUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 24019 | 0.67 | 0.908817 |
Target: 5'- gCACCAaacuguGCGGCGUgauuUACCGGC-GUACc -3' miRNA: 3'- gGUGGU------UGUUGUA----AUGGCCGuCGUGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 25109 | 0.74 | 0.549047 |
Target: 5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3' miRNA: 3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 25200 | 0.67 | 0.908817 |
Target: 5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3' miRNA: 3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 26144 | 0.66 | 0.943711 |
Target: 5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3' miRNA: 3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 28238 | 0.67 | 0.915352 |
Target: 5'- -aGCCAAa---AUUugUGGCGGCACa -3' miRNA: 3'- ggUGGUUguugUAAugGCCGUCGUGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 29484 | 0.68 | 0.879863 |
Target: 5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3' miRNA: 3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 32771 | 0.67 | 0.927561 |
Target: 5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3' miRNA: 3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 32865 | 0.68 | 0.894894 |
Target: 5'- gCGCCuguuCAGCAgacACCGGCguuuaaGGCACa -3' miRNA: 3'- gGUGGuu--GUUGUaa-UGGCCG------UCGUGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 35969 | 0.72 | 0.705365 |
Target: 5'- gCCACCGACu-CAUUACCGuGC-GUACc -3' miRNA: 3'- -GGUGGUUGuuGUAAUGGC-CGuCGUGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 36029 | 0.66 | 0.938615 |
Target: 5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3' miRNA: 3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 36121 | 0.7 | 0.769648 |
Target: 5'- aCACCAcACAGCGUgACgGGgAGCugGu -3' miRNA: 3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 36278 | 0.68 | 0.862101 |
Target: 5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3' miRNA: 3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 36899 | 0.67 | 0.915352 |
Target: 5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3' miRNA: 3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 37871 | 0.79 | 0.325732 |
Target: 5'- gCCACCGGCAGCAUccuUACUGaaAGCGCGa -3' miRNA: 3'- -GGUGGUUGUUGUA---AUGGCcgUCGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 40185 | 0.66 | 0.948054 |
Target: 5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3' miRNA: 3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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