Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 61146 | 0.67 | 0.927561 |
Target: 5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3' miRNA: 3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 60410 | 0.66 | 0.943214 |
Target: 5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3' miRNA: 3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 58996 | 0.71 | 0.727222 |
Target: 5'- aCACCAaaGCAcgGUUGCgGGCAGCAa- -3' miRNA: 3'- gGUGGU--UGUugUAAUGgCCGUCGUgc -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 56696 | 0.99 | 0.017262 |
Target: 5'- aCCACCAACAACAUUA-CGGCAGCACGg -3' miRNA: 3'- -GGUGGUUGUUGUAAUgGCCGUCGUGC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 56219 | 0.7 | 0.790022 |
Target: 5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3' miRNA: 3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 54262 | 0.72 | 0.660848 |
Target: 5'- gCACCAAgGugacGCAaUACCGGCGGCguACGc -3' miRNA: 3'- gGUGGUUgU----UGUaAUGGCCGUCG--UGC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 52540 | 0.71 | 0.738008 |
Target: 5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3' miRNA: 3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 51467 | 0.66 | 0.938615 |
Target: 5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3' miRNA: 3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 50674 | 0.68 | 0.887515 |
Target: 5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3' miRNA: 3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 50586 | 0.67 | 0.901996 |
Target: 5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3' miRNA: 3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 50319 | 0.7 | 0.790022 |
Target: 5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3' miRNA: 3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 50073 | 0.69 | 0.855336 |
Target: 5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3' miRNA: 3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 49681 | 0.71 | 0.727222 |
Target: 5'- aCCGCCAGCAACcaUAUCaGGUacaAGCGCa -3' miRNA: 3'- -GGUGGUUGUUGuaAUGG-CCG---UCGUGc -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 49597 | 0.67 | 0.921601 |
Target: 5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3' miRNA: 3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 49569 | 0.71 | 0.727222 |
Target: 5'- gCAcCCGGCGACAUcuUACCGGuCAGC-Ca -3' miRNA: 3'- gGU-GGUUGUUGUA--AUGGCC-GUCGuGc -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 49519 | 0.68 | 0.871945 |
Target: 5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3' miRNA: 3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 49414 | 0.67 | 0.907475 |
Target: 5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3' miRNA: 3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 48595 | 0.75 | 0.505738 |
Target: 5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3' miRNA: 3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 47016 | 0.69 | 0.819266 |
Target: 5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3' miRNA: 3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5' |
|||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 46472 | 0.69 | 0.837753 |
Target: 5'- ---aCGACAAUAUUGCUGGCAcCACa -3' miRNA: 3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home