miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1030 3' -50.5 NC_000924.1 + 14531 0.83 0.182176
Target:  5'- aUCACCAACAACA-UGCCGGaaCAGUACGa -3'
miRNA:   3'- -GGUGGUUGUUGUaAUGGCC--GUCGUGC- -5'
1030 3' -50.5 NC_000924.1 + 36029 0.66 0.938615
Target:  5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3'
miRNA:   3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5'
1030 3' -50.5 NC_000924.1 + 41121 0.67 0.927561
Target:  5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3'
miRNA:   3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5'
1030 3' -50.5 NC_000924.1 + 15228 0.67 0.921601
Target:  5'- gCGCCG--GACGUUGCCGcGCuaacaGGCGCa -3'
miRNA:   3'- gGUGGUugUUGUAAUGGC-CG-----UCGUGc -5'
1030 3' -50.5 NC_000924.1 + 49597 0.67 0.921601
Target:  5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3'
miRNA:   3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5'
1030 3' -50.5 NC_000924.1 + 32865 0.68 0.894894
Target:  5'- gCGCCuguuCAGCAgacACCGGCguuuaaGGCACa -3'
miRNA:   3'- gGUGGuu--GUUGUaa-UGGCCG------UCGUGc -5'
1030 3' -50.5 NC_000924.1 + 50674 0.68 0.887515
Target:  5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3'
miRNA:   3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5'
1030 3' -50.5 NC_000924.1 + 46472 0.69 0.837753
Target:  5'- ---aCGACAAUAUUGCUGGCAcCACa -3'
miRNA:   3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5'
1030 3' -50.5 NC_000924.1 + 21208 0.69 0.837753
Target:  5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3'
miRNA:   3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5'
1030 3' -50.5 NC_000924.1 + 48595 0.75 0.505738
Target:  5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3'
miRNA:   3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5'
1030 3' -50.5 NC_000924.1 + 25109 0.74 0.549047
Target:  5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3'
miRNA:   3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5'
1030 3' -50.5 NC_000924.1 + 52540 0.71 0.738008
Target:  5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3'
miRNA:   3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5'
1030 3' -50.5 NC_000924.1 + 36121 0.7 0.769648
Target:  5'- aCACCAcACAGCGUgACgGGgAGCugGu -3'
miRNA:   3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5'
1030 3' -50.5 NC_000924.1 + 50319 0.7 0.790022
Target:  5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3'
miRNA:   3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5'
1030 3' -50.5 NC_000924.1 + 47016 0.69 0.819266
Target:  5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3'
miRNA:   3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5'
1030 3' -50.5 NC_000924.1 + 56696 0.99 0.017262
Target:  5'- aCCACCAACAACAUUA-CGGCAGCACGg -3'
miRNA:   3'- -GGUGGUUGUUGUAAUgGCCGUCGUGC- -5'
1030 3' -50.5 NC_000924.1 + 26144 0.66 0.943711
Target:  5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3'
miRNA:   3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5'
1030 3' -50.5 NC_000924.1 + 60410 0.66 0.943214
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
1030 3' -50.5 NC_000924.1 + 51467 0.66 0.938615
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
1030 3' -50.5 NC_000924.1 + 23777 0.66 0.938615
Target:  5'- -aACCAGCAgaaugcccGCAUUcGCCGGUAuaACGg -3'
miRNA:   3'- ggUGGUUGU--------UGUAA-UGGCCGUcgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.