Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1030 | 3' | -50.5 | NC_000924.1 | + | 32771 | 0.67 | 0.927561 |
Target: 5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3' miRNA: 3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 50073 | 0.69 | 0.855336 |
Target: 5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3' miRNA: 3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 56219 | 0.7 | 0.790022 |
Target: 5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3' miRNA: 3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 56696 | 0.99 | 0.017262 |
Target: 5'- aCCACCAACAACAUUA-CGGCAGCACGg -3' miRNA: 3'- -GGUGGUUGUUGUAAUgGCCGUCGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 40185 | 0.66 | 0.948054 |
Target: 5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3' miRNA: 3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 26144 | 0.66 | 0.943711 |
Target: 5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3' miRNA: 3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 60410 | 0.66 | 0.943214 |
Target: 5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3' miRNA: 3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 51467 | 0.66 | 0.938615 |
Target: 5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3' miRNA: 3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 23777 | 0.66 | 0.938615 |
Target: 5'- -aACCAGCAgaaugcccGCAUUcGCCGGUAuaACGg -3' miRNA: 3'- ggUGGUUGU--------UGUAA-UGGCCGUcgUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 36278 | 0.68 | 0.862101 |
Target: 5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3' miRNA: 3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 29484 | 0.68 | 0.879863 |
Target: 5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3' miRNA: 3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 50586 | 0.67 | 0.901996 |
Target: 5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3' miRNA: 3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 28238 | 0.67 | 0.915352 |
Target: 5'- -aGCCAAa---AUUugUGGCGGCACa -3' miRNA: 3'- ggUGGUUguugUAAugGCCGUCGUGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 41615 | 0.68 | 0.879863 |
Target: 5'- uUACCGGCAAac---CCGGCGGCAa- -3' miRNA: 3'- gGUGGUUGUUguaauGGCCGUCGUgc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 36899 | 0.67 | 0.915352 |
Target: 5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3' miRNA: 3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 49414 | 0.67 | 0.907475 |
Target: 5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3' miRNA: 3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 49519 | 0.68 | 0.871945 |
Target: 5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3' miRNA: 3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 41911 | 0.69 | 0.855336 |
Target: 5'- gUCGCCAgcGCGACAUUACCGuuuGCAUc -3' miRNA: 3'- -GGUGGU--UGUUGUAAUGGCcguCGUGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 24019 | 0.67 | 0.908817 |
Target: 5'- gCACCAaacuguGCGGCGUgauuUACCGGC-GUACc -3' miRNA: 3'- gGUGGU------UGUUGUA----AUGGCCGuCGUGc -5' |
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1030 | 3' | -50.5 | NC_000924.1 | + | 25200 | 0.67 | 0.908817 |
Target: 5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3' miRNA: 3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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