miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10300 5' -52 NC_002687.1 + 330870 0.66 0.999122
Target:  5'- aGCAgGCCCgcUCGCugGCCAGCAg--- -3'
miRNA:   3'- -UGU-UGGGaaGGCGugUGGUUGUagcu -5'
10300 5' -52 NC_002687.1 + 328797 0.66 0.999122
Target:  5'- aGCAugCCU--CGUAgCGCUGACAUCGGa -3'
miRNA:   3'- -UGUugGGAagGCGU-GUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 312977 0.67 0.995948
Target:  5'- uCGACUCUUCCGCACcgGCCuuAACGaUGAc -3'
miRNA:   3'- uGUUGGGAAGGCGUG--UGG--UUGUaGCU- -5'
10300 5' -52 NC_002687.1 + 312845 0.69 0.98643
Target:  5'- cGCAACCaa-CCGCaugauguACGCCAcuACGUCGAc -3'
miRNA:   3'- -UGUUGGgaaGGCG-------UGUGGU--UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 305956 0.69 0.988092
Target:  5'- cCAGCUCUUCCGgugaCACACCAagguACGccUCGAc -3'
miRNA:   3'- uGUUGGGAAGGC----GUGUGGU----UGU--AGCU- -5'
10300 5' -52 NC_002687.1 + 303811 0.67 0.996519
Target:  5'- gGCAGCaCCa-CC-CGCACCAACGUCa- -3'
miRNA:   3'- -UGUUG-GGaaGGcGUGUGGUUGUAGcu -5'
10300 5' -52 NC_002687.1 + 300527 0.68 0.994574
Target:  5'- cAC-ACUCUcaCCGCGCACCAAgGUCa- -3'
miRNA:   3'- -UGuUGGGAa-GGCGUGUGGUUgUAGcu -5'
10300 5' -52 NC_002687.1 + 296336 0.66 0.999122
Target:  5'- cACAucauGCCCcagCUGCACACUu-CGUCGGu -3'
miRNA:   3'- -UGU----UGGGaa-GGCGUGUGGuuGUAGCU- -5'
10300 5' -52 NC_002687.1 + 294199 0.68 0.994574
Target:  5'- gGCAcguGCCCUUCgUGuCGgGCCAACAuuUCGAu -3'
miRNA:   3'- -UGU---UGGGAAG-GC-GUgUGGUUGU--AGCU- -5'
10300 5' -52 NC_002687.1 + 281141 0.66 0.998725
Target:  5'- cACGGCCUUUCUGCuCACCuguuUUGAa -3'
miRNA:   3'- -UGUUGGGAAGGCGuGUGGuuguAGCU- -5'
10300 5' -52 NC_002687.1 + 278029 0.66 0.998185
Target:  5'- cACAACaaaUUCUGcCACACCGucuGCAUCGu -3'
miRNA:   3'- -UGUUGgg-AAGGC-GUGUGGU---UGUAGCu -5'
10300 5' -52 NC_002687.1 + 277564 0.69 0.988092
Target:  5'- cACAGgCUgcaaCC-CACGCCGACGUCGAa -3'
miRNA:   3'- -UGUUgGGaa--GGcGUGUGGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 276368 0.69 0.989463
Target:  5'- uAUAGCCgaaagCgGCGCGCuCAACAUCGAa -3'
miRNA:   3'- -UGUUGGgaa--GgCGUGUG-GUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 268938 0.73 0.906418
Target:  5'- aGCGugucACCUUUCUGUACACUucggAGCAUCGAa -3'
miRNA:   3'- -UGU----UGGGAAGGCGUGUGG----UUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 260561 0.66 0.998306
Target:  5'- cGCAGCCUgucucucggccaacgUUUCGCACGCCAuugGCAUa-- -3'
miRNA:   3'- -UGUUGGG---------------AAGGCGUGUGGU---UGUAgcu -5'
10300 5' -52 NC_002687.1 + 254919 0.67 0.995948
Target:  5'- uGCAGCuCCUcgUCUGCGCcAUCGuucagGCAUCGAu -3'
miRNA:   3'- -UGUUG-GGA--AGGCGUG-UGGU-----UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 252155 0.67 0.995948
Target:  5'- uGCAGCCaguggaCgCGCGCACCGGaaaAUCGAg -3'
miRNA:   3'- -UGUUGGgaa---G-GCGUGUGGUUg--UAGCU- -5'
10300 5' -52 NC_002687.1 + 249364 0.66 0.998725
Target:  5'- aACGACCCcuUUCgGCGC-CCGGCcugGUUGAu -3'
miRNA:   3'- -UGUUGGG--AAGgCGUGuGGUUG---UAGCU- -5'
10300 5' -52 NC_002687.1 + 239373 0.66 0.998725
Target:  5'- gUAGCCuUUUUCGUACACCGACAa--- -3'
miRNA:   3'- uGUUGG-GAAGGCGUGUGGUUGUagcu -5'
10300 5' -52 NC_002687.1 + 225225 0.67 0.996519
Target:  5'- uGCGugCCgaCCGUgccgGCGCCGccGCGUCGGc -3'
miRNA:   3'- -UGUugGGaaGGCG----UGUGGU--UGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.