Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10303 | 3' | -46 | NC_002687.1 | + | 53570 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 53505 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 54151 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 229063 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 54682 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 53699 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 53828 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 228092 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 228610 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 53957 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 228998 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 54488 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 227793 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 229193 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 229258 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUGUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 228869 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 228675 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 228288 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 228353 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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10303 | 3' | -46 | NC_002687.1 | + | 54553 | 1.08 | 0.060044 |
Target: 5'- cAACGUAACACGAUUUAUCGUGCUGCAa -3' miRNA: 3'- -UUGCAUUGUGCUAAAUAGCACGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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