miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10304 5' -50.5 NC_002687.1 + 53917 1.1 0.01483
Target:  5'- aUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 54901 1.1 0.01483
Target:  5'- aUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 52634 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 52715 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 54303 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 53401 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 53212 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 53018 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 52823 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 53724 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 52569 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 55047 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 54111 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 55112 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 53148 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 52953 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228263 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228067 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 53083 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 54384 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.