Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 50234 | 0.7 | 0.989294 |
Target: 5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3' miRNA: 3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 50393 | 1 | 0.055729 |
Target: 5'- --aGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- acaCGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 51121 | 0.7 | 0.989294 |
Target: 5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3' miRNA: 3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 51282 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 51347 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 51412 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 51479 | 1 | 0.058845 |
Target: 5'- gUGUGCguAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 51558 | 1.05 | 0.029654 |
Target: 5'- gUGUGCAGUUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 51624 | 0.99 | 0.069236 |
Target: 5'- gGUGCauAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 51687 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 51749 | 1 | 0.055729 |
Target: 5'- --aGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- acaCGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 52106 | 0.7 | 0.989294 |
Target: 5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3' miRNA: 3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 52358 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 52425 | 1 | 0.058845 |
Target: 5'- gUGUGCguAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 52504 | 1.02 | 0.042405 |
Target: 5'- gUGUGCAGCUCACUuAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAuUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 52569 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 52634 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 52715 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 52758 | 0.66 | 0.999559 |
Target: 5'- gUGUGUAGCUCACUAAGgggacaaaaggUGUGggGaCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUa----------GCACgaC-GU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 52823 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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