miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10304 5' -50.5 NC_002687.1 + 228067 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228327 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228972 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 129142 0.66 0.999454
Target:  5'- gGUGUGGCUCACgu-AUCcuUGCUGgAu -3'
miRNA:   3'- aCACGUCGAGUGauuUAGc-ACGACgU- -5'
10304 5' -50.5 NC_002687.1 + 227873 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 227938 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228132 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228650 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228844 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 229233 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 229038 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228779 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228263 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 229103 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228585 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228715 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 229168 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228456 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 227833 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 228003 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.