miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10305 5' -59.9 NC_002687.1 + 3226 0.66 0.917229
Target:  5'- cGACGAagGCGCCauCGGCGCCCucgaGACCGc -3'
miRNA:   3'- -UUGUUg-CGCGG--GCUGUGGGc---CUGGCu -5'
10305 5' -59.9 NC_002687.1 + 121859 0.66 0.904493
Target:  5'- cACGGCGUgGCCCGugGCggaacccucggaauCCGGGCaCGGg -3'
miRNA:   3'- uUGUUGCG-CGGGCugUG--------------GGCCUG-GCU- -5'
10305 5' -59.9 NC_002687.1 + 145650 0.66 0.900406
Target:  5'- cACAACGCuCuCCGAaGCCUGGAUCGc -3'
miRNA:   3'- uUGUUGCGcG-GGCUgUGGGCCUGGCu -5'
10305 5' -59.9 NC_002687.1 + 303852 0.66 0.894399
Target:  5'- cAGCAGCGgGCCUaGCcCCCGGAgCa- -3'
miRNA:   3'- -UUGUUGCgCGGGcUGuGGGCCUgGcu -5'
10305 5' -59.9 NC_002687.1 + 100712 0.66 0.894399
Target:  5'- -cCAACGUGCCCGuguuCGugUUCGGGCCGc -3'
miRNA:   3'- uuGUUGCGCGGGCu---GU--GGGCCUGGCu -5'
10305 5' -59.9 NC_002687.1 + 78619 0.66 0.894399
Target:  5'- cACAGCGCGCCCccagguucaggGGCACggUGGACCc- -3'
miRNA:   3'- uUGUUGCGCGGG-----------CUGUGg-GCCUGGcu -5'
10305 5' -59.9 NC_002687.1 + 240197 0.67 0.881799
Target:  5'- cAGCAuC-CGCCgCGGCGgCCGGACCa- -3'
miRNA:   3'- -UUGUuGcGCGG-GCUGUgGGCCUGGcu -5'
10305 5' -59.9 NC_002687.1 + 333321 0.67 0.881799
Target:  5'- cAACAuACGCGCUCGACACCaagaauauggcaCGuGGCCu- -3'
miRNA:   3'- -UUGU-UGCGCGGGCUGUGG------------GC-CUGGcu -5'
10305 5' -59.9 NC_002687.1 + 323499 0.67 0.877208
Target:  5'- gGACGACGCGCCggcaucucucuuuCGGCAaggugaggcgucccuCCUGGugUGAa -3'
miRNA:   3'- -UUGUUGCGCGG-------------GCUGU---------------GGGCCugGCU- -5'
10305 5' -59.9 NC_002687.1 + 106989 0.67 0.847057
Target:  5'- gGACAugGUGUCgGuGCuCCCGGACgGAa -3'
miRNA:   3'- -UUGUugCGCGGgC-UGuGGGCCUGgCU- -5'
10305 5' -59.9 NC_002687.1 + 204819 0.67 0.847057
Target:  5'- gAAC-ACGCGCCCGACAauCCCuccaGCCGu -3'
miRNA:   3'- -UUGuUGCGCGGGCUGU--GGGcc--UGGCu -5'
10305 5' -59.9 NC_002687.1 + 37801 0.67 0.847057
Target:  5'- cACAACGUGCCCGAUAUgUauaACCGAg -3'
miRNA:   3'- uUGUUGCGCGGGCUGUGgGcc-UGGCU- -5'
10305 5' -59.9 NC_002687.1 + 112237 0.67 0.847057
Target:  5'- aAACuucauCGUGCUCGGCAUCCcgaGGAUCGAa -3'
miRNA:   3'- -UUGuu---GCGCGGGCUGUGGG---CCUGGCU- -5'
10305 5' -59.9 NC_002687.1 + 298975 0.68 0.839588
Target:  5'- gAGCAGCGCugcGCCCG-CcUCCGGAgcaCCGAg -3'
miRNA:   3'- -UUGUUGCG---CGGGCuGuGGGCCU---GGCU- -5'
10305 5' -59.9 NC_002687.1 + 117582 0.68 0.824173
Target:  5'- cGAUGGCGaCGCCU-ACACCCGcGCCGGg -3'
miRNA:   3'- -UUGUUGC-GCGGGcUGUGGGCcUGGCU- -5'
10305 5' -59.9 NC_002687.1 + 148550 0.68 0.799948
Target:  5'- --gGACGCGCCCGGCAaguCCCuuACCGc -3'
miRNA:   3'- uugUUGCGCGGGCUGU---GGGccUGGCu -5'
10305 5' -59.9 NC_002687.1 + 157164 0.69 0.791605
Target:  5'- -cCAGCGCGUuuCCGAUGCCCuuucGGACCu- -3'
miRNA:   3'- uuGUUGCGCG--GGCUGUGGG----CCUGGcu -5'
10305 5' -59.9 NC_002687.1 + 44054 0.69 0.774557
Target:  5'- uGAUuGCGCGCCCGAUgACCUGGuucauCUGGg -3'
miRNA:   3'- -UUGuUGCGCGGGCUG-UGGGCCu----GGCU- -5'
10305 5' -59.9 NC_002687.1 + 249182 0.69 0.774557
Target:  5'- --gGACGCuucuuucuccGUCCGACGCCCcGGACCu- -3'
miRNA:   3'- uugUUGCG----------CGGGCUGUGGG-CCUGGcu -5'
10305 5' -59.9 NC_002687.1 + 86499 0.69 0.748187
Target:  5'- aAAUGGCGUaGCCaUGGCACCCaugGGGCCGAu -3'
miRNA:   3'- -UUGUUGCG-CGG-GCUGUGGG---CCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.