miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10306 5' -50.5 NC_002687.1 + 61950 1.1 0.017072
Target:  5'- gUGCCGGAUGCCGAAAGCCAAAACUUCc -3'
miRNA:   3'- -ACGGCCUACGGCUUUCGGUUUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 3570 0.78 0.751966
Target:  5'- gGCCGG-UGCCGAcgucggagcaaAGGCCGAcuuGCUUCg -3'
miRNA:   3'- aCGGCCuACGGCU-----------UUCGGUUu--UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 174735 0.74 0.912097
Target:  5'- cGCCGGAaccGCCGGAAccGCCGGAACc-- -3'
miRNA:   3'- aCGGCCUa--CGGCUUU--CGGUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 99420 0.74 0.933968
Target:  5'- gUGCCguGGGUGCCGGucaugaGGGCCAugauCUUCg -3'
miRNA:   3'- -ACGG--CCUACGGCU------UUCGGUuuu-GAAG- -5'
10306 5' -50.5 NC_002687.1 + 26212 0.73 0.951633
Target:  5'- aGCaCGGAcacaGCUGAAGGCCGccgugagAAACUUCa -3'
miRNA:   3'- aCG-GCCUa---CGGCUUUCGGU-------UUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 106692 0.72 0.959688
Target:  5'- cGCCGGGacagUGCUGAGAGUUGAu-CUUCa -3'
miRNA:   3'- aCGGCCU----ACGGCUUUCGGUUuuGAAG- -5'
10306 5' -50.5 NC_002687.1 + 224400 0.71 0.975032
Target:  5'- aUGCC-GAUGCCGAu-GCCGAuACUg- -3'
miRNA:   3'- -ACGGcCUACGGCUuuCGGUUuUGAag -5'
10306 5' -50.5 NC_002687.1 + 20756 0.71 0.975032
Target:  5'- cUGCCGG-UGCCGAu-GUCA--ACUUCc -3'
miRNA:   3'- -ACGGCCuACGGCUuuCGGUuuUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 308763 0.71 0.977499
Target:  5'- cGCCGGGUgGCUGGuAGGCgCAAGGCUc- -3'
miRNA:   3'- aCGGCCUA-CGGCU-UUCG-GUUUUGAag -5'
10306 5' -50.5 NC_002687.1 + 251555 0.71 0.979562
Target:  5'- aGCaCGGugcaagucGUGCCGGAAGCCGAAGacguauuUUUCg -3'
miRNA:   3'- aCG-GCC--------UACGGCUUUCGGUUUU-------GAAG- -5'
10306 5' -50.5 NC_002687.1 + 256245 0.71 0.979783
Target:  5'- cGCUGGAcgGUaCGAAAGCCAucguguGCUUCc -3'
miRNA:   3'- aCGGCCUa-CG-GCUUUCGGUuu----UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 259368 0.71 0.979783
Target:  5'- aGCUGGuUGCCGAucGGCCAcGAACaggUCg -3'
miRNA:   3'- aCGGCCuACGGCUu-UCGGU-UUUGa--AG- -5'
10306 5' -50.5 NC_002687.1 + 224274 0.71 0.979783
Target:  5'- aUGCC-GAUGCCGAu-GCCGAuGCUg- -3'
miRNA:   3'- -ACGGcCUACGGCUuuCGGUUuUGAag -5'
10306 5' -50.5 NC_002687.1 + 203719 0.71 0.981889
Target:  5'- cUGCCGGAagagcUGCUGAAcggGGCCAGcACg-- -3'
miRNA:   3'- -ACGGCCU-----ACGGCUU---UCGGUUuUGaag -5'
10306 5' -50.5 NC_002687.1 + 137802 0.71 0.981889
Target:  5'- cGCCGauguugacGGUGCCGAAAGCCcccgacccuAUUUCa -3'
miRNA:   3'- aCGGC--------CUACGGCUUUCGGuuu------UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 164642 0.71 0.983826
Target:  5'- gUGCCGG-UGCCGAu-GCCGccACUg- -3'
miRNA:   3'- -ACGGCCuACGGCUuuCGGUuuUGAag -5'
10306 5' -50.5 NC_002687.1 + 173201 0.7 0.987225
Target:  5'- cGUCGGAaGCCGAAgcAGCCGAAc---- -3'
miRNA:   3'- aCGGCCUaCGGCUU--UCGGUUUugaag -5'
10306 5' -50.5 NC_002687.1 + 6482 0.7 0.988418
Target:  5'- aGCUGGAggugGCCGAAcgagacuacuucGCCAGAcgguACUUCg -3'
miRNA:   3'- aCGGCCUa---CGGCUUu-----------CGGUUU----UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 63119 0.7 0.988703
Target:  5'- gUGCUcGAUGCC-AGGGCCGcuAACUUCg -3'
miRNA:   3'- -ACGGcCUACGGcUUUCGGUu-UUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 250704 0.7 0.988703
Target:  5'- -cCCGGcgGCCGAAAGCaacGACUgUCa -3'
miRNA:   3'- acGGCCuaCGGCUUUCGguuUUGA-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.