miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10306 5' -50.5 NC_002687.1 + 174735 0.74 0.912097
Target:  5'- cGCCGGAaccGCCGGAAccGCCGGAACc-- -3'
miRNA:   3'- aCGGCCUa--CGGCUUU--CGGUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 291697 0.68 0.997272
Target:  5'- cUGCUGGGUGUgGgGAAGCUAGGuuuucccuacaauACUUCg -3'
miRNA:   3'- -ACGGCCUACGgC-UUUCGGUUU-------------UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 254300 0.68 0.998217
Target:  5'- cGCCGGAauccauugucgagauUGCCGGAGagguGCCcGAACg-- -3'
miRNA:   3'- aCGGCCU---------------ACGGCUUU----CGGuUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 181057 0.66 0.999743
Target:  5'- aGCC-GAUGCagcucguucaCGAAGGCCGAGAgUUg -3'
miRNA:   3'- aCGGcCUACG----------GCUUUCGGUUUUgAAg -5'
10306 5' -50.5 NC_002687.1 + 20756 0.71 0.975032
Target:  5'- cUGCCGG-UGCCGAu-GUCA--ACUUCc -3'
miRNA:   3'- -ACGGCCuACGGCUuuCGGUuuUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 224400 0.71 0.975032
Target:  5'- aUGCC-GAUGCCGAu-GCCGAuACUg- -3'
miRNA:   3'- -ACGGcCUACGGCUuuCGGUUuUGAag -5'
10306 5' -50.5 NC_002687.1 + 256245 0.71 0.979783
Target:  5'- cGCUGGAcgGUaCGAAAGCCAucguguGCUUCc -3'
miRNA:   3'- aCGGCCUa-CG-GCUUUCGGUuu----UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 173201 0.7 0.987225
Target:  5'- cGUCGGAaGCCGAAgcAGCCGAAc---- -3'
miRNA:   3'- aCGGCCUaCGGCUU--UCGGUUUugaag -5'
10306 5' -50.5 NC_002687.1 + 315824 0.7 0.991258
Target:  5'- cGCCGGGUGCCGcc-GCCGcacccGAAgaUCc -3'
miRNA:   3'- aCGGCCUACGGCuuuCGGU-----UUUgaAG- -5'
10306 5' -50.5 NC_002687.1 + 164169 0.68 0.996843
Target:  5'- cGCCGGA-GUCGucacGCaCAGAGCUUUg -3'
miRNA:   3'- aCGGCCUaCGGCuuu-CG-GUUUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 267132 0.68 0.996303
Target:  5'- uUGCaguauGGGUGCCGAuggAAGCCAu--UUUCu -3'
miRNA:   3'- -ACGg----CCUACGGCU---UUCGGUuuuGAAG- -5'
10306 5' -50.5 NC_002687.1 + 250704 0.7 0.988703
Target:  5'- -cCCGGcgGCCGAAAGCaacGACUgUCa -3'
miRNA:   3'- acGGCCuaCGGCUUUCGguuUUGA-AG- -5'
10306 5' -50.5 NC_002687.1 + 99420 0.74 0.933968
Target:  5'- gUGCCguGGGUGCCGGucaugaGGGCCAugauCUUCg -3'
miRNA:   3'- -ACGG--CCUACGGCU------UUCGGUuuu-GAAG- -5'
10306 5' -50.5 NC_002687.1 + 280917 0.68 0.996303
Target:  5'- aGCCucagcGAUGCCGggGGCCcguguuGAAGCa-- -3'
miRNA:   3'- aCGGc----CUACGGCuuUCGG------UUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 26212 0.73 0.951633
Target:  5'- aGCaCGGAcacaGCUGAAGGCCGccgugagAAACUUCa -3'
miRNA:   3'- aCG-GCCUa---CGGCUUUCGGU-------UUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 63119 0.7 0.988703
Target:  5'- gUGCUcGAUGCC-AGGGCCGcuAACUUCg -3'
miRNA:   3'- -ACGGcCUACGGcUUUCGGUu-UUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 71954 0.68 0.996843
Target:  5'- cGCCGGAgauucucucgUGCuUGAcGGCCAGAAggUCa -3'
miRNA:   3'- aCGGCCU----------ACG-GCUuUCGGUUUUgaAG- -5'
10306 5' -50.5 NC_002687.1 + 61630 0.68 0.998087
Target:  5'- -cCCGGAUGCCGAcacGUCGGAG-UUCa -3'
miRNA:   3'- acGGCCUACGGCUuu-CGGUUUUgAAG- -5'
10306 5' -50.5 NC_002687.1 + 106692 0.72 0.959688
Target:  5'- cGCCGGGacagUGCUGAGAGUUGAu-CUUCa -3'
miRNA:   3'- aCGGCCU----ACGGCUUUCGGUUuuGAAG- -5'
10306 5' -50.5 NC_002687.1 + 224274 0.71 0.979783
Target:  5'- aUGCC-GAUGCCGAu-GCCGAuGCUg- -3'
miRNA:   3'- -ACGGcCUACGGCUuuCGGUUuUGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.