miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10306 5' -50.5 NC_002687.1 + 3570 0.78 0.751966
Target:  5'- gGCCGG-UGCCGAcgucggagcaaAGGCCGAcuuGCUUCg -3'
miRNA:   3'- aCGGCCuACGGCU-----------UUCGGUUu--UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 4246 0.66 0.999743
Target:  5'- gGCCGcGGUGCCuaGAAGcGCCGAGuCUa- -3'
miRNA:   3'- aCGGC-CUACGG--CUUU-CGGUUUuGAag -5'
10306 5' -50.5 NC_002687.1 + 6482 0.7 0.988418
Target:  5'- aGCUGGAggugGCCGAAcgagacuacuucGCCAGAcgguACUUCg -3'
miRNA:   3'- aCGGCCUa---CGGCUUu-----------CGGUUU----UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 18336 0.66 0.999502
Target:  5'- -aCCGGccGUCGAAGGCCGguaucGGACaUUCa -3'
miRNA:   3'- acGGCCuaCGGCUUUCGGU-----UUUG-AAG- -5'
10306 5' -50.5 NC_002687.1 + 18763 0.68 0.997729
Target:  5'- -aCCGGA-GCCGAAGGaCCAGAAg--- -3'
miRNA:   3'- acGGCCUaCGGCUUUC-GGUUUUgaag -5'
10306 5' -50.5 NC_002687.1 + 20756 0.71 0.975032
Target:  5'- cUGCCGG-UGCCGAu-GUCA--ACUUCc -3'
miRNA:   3'- -ACGGCCuACGGCUuuCGGUuuUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 26212 0.73 0.951633
Target:  5'- aGCaCGGAcacaGCUGAAGGCCGccgugagAAACUUCa -3'
miRNA:   3'- aCG-GCCUa---CGGCUUUCGGU-------UUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 30593 0.66 0.999386
Target:  5'- gGCCGGGggguUGCCGAGgacAGUCAAcguGGCg-- -3'
miRNA:   3'- aCGGCCU----ACGGCUU---UCGGUU---UUGaag -5'
10306 5' -50.5 NC_002687.1 + 31161 0.66 0.999502
Target:  5'- cGCCGG-UGCCGAu-GUgAAGGCa-- -3'
miRNA:   3'- aCGGCCuACGGCUuuCGgUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 32309 0.66 0.999502
Target:  5'- aGCCGaGUGUaCGGAAGuCCAGAGCg-- -3'
miRNA:   3'- aCGGCcUACG-GCUUUC-GGUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 41233 0.66 0.999502
Target:  5'- cGCaCGGAaagUGgCGGGAGCgGguAGGCUUCg -3'
miRNA:   3'- aCG-GCCU---ACgGCUUUCGgU--UUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 41317 0.67 0.999248
Target:  5'- uUGCCGGAgaagcgcgaGCCGcAAGCCGugucGAugUUg -3'
miRNA:   3'- -ACGGCCUa--------CGGCuUUCGGU----UUugAAg -5'
10306 5' -50.5 NC_002687.1 + 61630 0.68 0.998087
Target:  5'- -cCCGGAUGCCGAcacGUCGGAG-UUCa -3'
miRNA:   3'- acGGCCUACGGCUuu-CGGUUUUgAAG- -5'
10306 5' -50.5 NC_002687.1 + 61950 1.1 0.017072
Target:  5'- gUGCCGGAUGCCGAAAGCCAAAACUUCc -3'
miRNA:   3'- -ACGGCCUACGGCUUUCGGUUUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 63119 0.7 0.988703
Target:  5'- gUGCUcGAUGCC-AGGGCCGcuAACUUCg -3'
miRNA:   3'- -ACGGcCUACGGcUUUCGGUu-UUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 71954 0.68 0.996843
Target:  5'- cGCCGGAgauucucucgUGCuUGAcGGCCAGAAggUCa -3'
miRNA:   3'- aCGGCCU----------ACG-GCUuUCGGUUUUgaAG- -5'
10306 5' -50.5 NC_002687.1 + 72185 0.69 0.99569
Target:  5'- cGgCGGAUGCCGAaaAAGgCAucGCUaUCg -3'
miRNA:   3'- aCgGCCUACGGCU--UUCgGUuuUGA-AG- -5'
10306 5' -50.5 NC_002687.1 + 80416 0.67 0.999248
Target:  5'- cGUCGGuGUGCCGGAcGCCGAu----- -3'
miRNA:   3'- aCGGCC-UACGGCUUuCGGUUuugaag -5'
10306 5' -50.5 NC_002687.1 + 81560 0.7 0.991142
Target:  5'- uUGCCGGcguagcgGUGCCcGAGGCCGAAGg-UCu -3'
miRNA:   3'- -ACGGCC-------UACGGcUUUCGGUUUUgaAG- -5'
10306 5' -50.5 NC_002687.1 + 82010 0.67 0.999248
Target:  5'- cGUuuUGGGUGCUGAgcgggAGGCCAucgcccGGCUUCa -3'
miRNA:   3'- aCG--GCCUACGGCU-----UUCGGUu-----UUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.