miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10308 3' -47.1 NC_002687.1 + 172588 0.66 0.999999
Target:  5'- --cUUCuucCAGGGCCUGCUUGauguUGGUc -3'
miRNA:   3'- uuuAAGcuaGUUUCGGACGAAC----ACCG- -5'
10308 3' -47.1 NC_002687.1 + 63233 0.66 0.999998
Target:  5'- ----cUGGUCGAAGCCgccaaGCgaUGUGGUu -3'
miRNA:   3'- uuuaaGCUAGUUUCGGa----CGa-ACACCG- -5'
10308 3' -47.1 NC_002687.1 + 322339 0.66 0.999998
Target:  5'- --uUUCGAUCAGGuGCCUcaagGCgcgcUGUGcGCa -3'
miRNA:   3'- uuuAAGCUAGUUU-CGGA----CGa---ACAC-CG- -5'
10308 3' -47.1 NC_002687.1 + 149813 0.66 0.999997
Target:  5'- ---cUCGA---GAGCCUcgaGCUUGaUGGCg -3'
miRNA:   3'- uuuaAGCUaguUUCGGA---CGAAC-ACCG- -5'
10308 3' -47.1 NC_002687.1 + 35689 0.66 0.999997
Target:  5'- aGGGUUCGAUCAccuugAAGaCCUGauugacagcgcaaugGUGGCg -3'
miRNA:   3'- -UUUAAGCUAGU-----UUC-GGACgaa------------CACCG- -5'
10308 3' -47.1 NC_002687.1 + 161106 0.66 0.999997
Target:  5'- --uUUCGAUCGAucccGGCC-GC--GUGGCc -3'
miRNA:   3'- uuuAAGCUAGUU----UCGGaCGaaCACCG- -5'
10308 3' -47.1 NC_002687.1 + 23992 0.66 0.999996
Target:  5'- aGAGUgugUGGUgAAAGCugaCUGCUgucGUGGCg -3'
miRNA:   3'- -UUUAa--GCUAgUUUCG---GACGAa--CACCG- -5'
10308 3' -47.1 NC_002687.1 + 301031 0.66 0.999996
Target:  5'- gAGAUUCGGUCcAGGUgaGCUUcucGGCg -3'
miRNA:   3'- -UUUAAGCUAGuUUCGgaCGAAca-CCG- -5'
10308 3' -47.1 NC_002687.1 + 276716 0.66 0.999996
Target:  5'- ---aUCGucaCGAAGCUgggGCU-GUGGCg -3'
miRNA:   3'- uuuaAGCua-GUUUCGGa--CGAaCACCG- -5'
10308 3' -47.1 NC_002687.1 + 204498 0.66 0.999996
Target:  5'- aGAGUUCGGU-GAAGCUgggGUcgGUGGUg -3'
miRNA:   3'- -UUUAAGCUAgUUUCGGa--CGaaCACCG- -5'
10308 3' -47.1 NC_002687.1 + 171467 0.67 0.999992
Target:  5'- -cGUUCGA-CGAGGCCUcgucgaggggGCUUGUGcCa -3'
miRNA:   3'- uuUAAGCUaGUUUCGGA----------CGAACACcG- -5'
10308 3' -47.1 NC_002687.1 + 79620 0.67 0.999985
Target:  5'- ---aUCGAcgaugUCGAGGCCacUGCUguaucugaugucgcgGUGGCg -3'
miRNA:   3'- uuuaAGCU-----AGUUUCGG--ACGAa--------------CACCG- -5'
10308 3' -47.1 NC_002687.1 + 248038 0.67 0.999979
Target:  5'- ---aUUGAUCAAAGCU----UGUGGCu -3'
miRNA:   3'- uuuaAGCUAGUUUCGGacgaACACCG- -5'
10308 3' -47.1 NC_002687.1 + 21740 0.67 0.999979
Target:  5'- ---cUCGaAUCucGAGCCaGCU-GUGGCg -3'
miRNA:   3'- uuuaAGC-UAGu-UUCGGaCGAaCACCG- -5'
10308 3' -47.1 NC_002687.1 + 305079 0.68 0.999962
Target:  5'- aGGAUUUGGUCGAGGUUggGCUUGaucacacGGCa -3'
miRNA:   3'- -UUUAAGCUAGUUUCGGa-CGAACa------CCG- -5'
10308 3' -47.1 NC_002687.1 + 87715 0.68 0.999932
Target:  5'- -----gGGUCAAcGCCggGCgUGUGGCg -3'
miRNA:   3'- uuuaagCUAGUUuCGGa-CGaACACCG- -5'
10308 3' -47.1 NC_002687.1 + 238309 0.68 0.999932
Target:  5'- ----cCGAUCucGGCCcgacGCUUGUcGGCg -3'
miRNA:   3'- uuuaaGCUAGuuUCGGa---CGAACA-CCG- -5'
10308 3' -47.1 NC_002687.1 + 125245 0.69 0.999808
Target:  5'- ----aUGGUCAAcggcGUCUGCaUGUGGCa -3'
miRNA:   3'- uuuaaGCUAGUUu---CGGACGaACACCG- -5'
10308 3' -47.1 NC_002687.1 + 198020 0.69 0.99975
Target:  5'- ---cUCGGUCGcgacauuGGGCCUGgggaUGUGGCa -3'
miRNA:   3'- uuuaAGCUAGU-------UUCGGACga--ACACCG- -5'
10308 3' -47.1 NC_002687.1 + 84852 0.7 0.999612
Target:  5'- ----cUGGUCAAgcucGGCgUGCgUUGUGGCg -3'
miRNA:   3'- uuuaaGCUAGUU----UCGgACG-AACACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.