miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10309 5' -51.5 NC_002687.1 + 67213 1.09 0.014609
Target:  5'- cAGUGGCCGCUUUCACGAAAGCCAAGAu -3'
miRNA:   3'- -UCACCGGCGAAAGUGCUUUCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 303898 0.8 0.602958
Target:  5'- aGGUGGUgGCUgcacuccggacagccUUCGCGAAGGCCAAGc -3'
miRNA:   3'- -UCACCGgCGA---------------AAGUGCUUUCGGUUCu -5'
10309 5' -51.5 NC_002687.1 + 217283 0.74 0.896244
Target:  5'- -uUGGCCGaCUUUCugGAA-GCCGGGc -3'
miRNA:   3'- ucACCGGC-GAAAGugCUUuCGGUUCu -5'
10309 5' -51.5 NC_002687.1 + 10370 0.73 0.90873
Target:  5'- gAGUGGCUGCgg-CgACGggGGUgGAGAa -3'
miRNA:   3'- -UCACCGGCGaaaG-UGCuuUCGgUUCU- -5'
10309 5' -51.5 NC_002687.1 + 159228 0.72 0.945118
Target:  5'- cGUGGuaGCUUUCACGuuGGCCu--- -3'
miRNA:   3'- uCACCggCGAAAGUGCuuUCGGuucu -5'
10309 5' -51.5 NC_002687.1 + 42358 0.72 0.945118
Target:  5'- uGGUGGCuCGCggagUUCGCGGAcgguGCCAAc- -3'
miRNA:   3'- -UCACCG-GCGa---AAGUGCUUu---CGGUUcu -5'
10309 5' -51.5 NC_002687.1 + 263517 0.72 0.953431
Target:  5'- -aUGGCCGCUUUUA-GAGAG-CAGGAa -3'
miRNA:   3'- ucACCGGCGAAAGUgCUUUCgGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 181057 0.72 0.953431
Target:  5'- ---aGCCGaugcagcucgUUCACGAAGGCCGAGAg -3'
miRNA:   3'- ucacCGGCga--------AAGUGCUUUCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 99424 0.71 0.964235
Target:  5'- cGUGGgUGCcggUCAUGAGGGCCAuGAu -3'
miRNA:   3'- uCACCgGCGaa-AGUGCUUUCGGUuCU- -5'
10309 5' -51.5 NC_002687.1 + 234195 0.7 0.975728
Target:  5'- aAGUGGCCGCUgau-CGGAAGCaacgCGAGc -3'
miRNA:   3'- -UCACCGGCGAaaguGCUUUCG----GUUCu -5'
10309 5' -51.5 NC_002687.1 + 72149 0.7 0.984254
Target:  5'- aGGcUGuGCCGCUUgauaGCGAu-GCCAAGAc -3'
miRNA:   3'- -UC-AC-CGGCGAAag--UGCUuuCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 211788 0.69 0.985306
Target:  5'- --aGGCgGCgaaggaaacuucgUUCACGGAAGUCGAGGu -3'
miRNA:   3'- ucaCCGgCGa------------AAGUGCUUUCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 280967 0.69 0.985977
Target:  5'- gGGUGGCgGCa---GCGgcGGCCGGGGu -3'
miRNA:   3'- -UCACCGgCGaaagUGCuuUCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 109904 0.69 0.987551
Target:  5'- cGGUGGCC-UUUUCcCGAAcaagaguuuuugGGCCGAGGa -3'
miRNA:   3'- -UCACCGGcGAAAGuGCUU------------UCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 291265 0.69 0.987551
Target:  5'- cGUGGCCGaCUgcacugC-CGAaguGAGCCAGGGc -3'
miRNA:   3'- uCACCGGC-GAaa----GuGCU---UUCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 103017 0.69 0.987551
Target:  5'- --aGGCCGCcaaggcCACGAAggcugcAGCCAAGGc -3'
miRNA:   3'- ucaCCGGCGaaa---GUGCUU------UCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 87484 0.69 0.991465
Target:  5'- -aUGGCCGggUUCAuCGggGGCguGGGa -3'
miRNA:   3'- ucACCGGCgaAAGU-GCuuUCGguUCU- -5'
10309 5' -51.5 NC_002687.1 + 260041 0.69 0.991465
Target:  5'- cGGUgGGCCGCggUUUACGA--GCaCAGGAu -3'
miRNA:   3'- -UCA-CCGGCGa-AAGUGCUuuCG-GUUCU- -5'
10309 5' -51.5 NC_002687.1 + 312766 0.68 0.993482
Target:  5'- -aUGGCCGCcgUCGCGGAuaccuguGCCAc-- -3'
miRNA:   3'- ucACCGGCGaaAGUGCUUu------CGGUucu -5'
10309 5' -51.5 NC_002687.1 + 25374 0.68 0.994255
Target:  5'- uGUGGCCGCcugcgUCACGAucacgaaAAGCaauacCAAGGa -3'
miRNA:   3'- uCACCGGCGaa---AGUGCU-------UUCG-----GUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.