miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10309 5' -51.5 NC_002687.1 + 10184 0.67 0.997687
Target:  5'- uGUGGCCGCggUCAaauauccCCAAGAg -3'
miRNA:   3'- uCACCGGCGaaAGUgcuuuc-GGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 10370 0.73 0.90873
Target:  5'- gAGUGGCUGCgg-CgACGggGGUgGAGAa -3'
miRNA:   3'- -UCACCGGCGaaaG-UGCuuUCGgUUCU- -5'
10309 5' -51.5 NC_002687.1 + 25374 0.68 0.994255
Target:  5'- uGUGGCCGCcugcgUCACGAucacgaaAAGCaauacCAAGGa -3'
miRNA:   3'- uCACCGGCGaa---AGUGCU-------UUCG-----GUUCU- -5'
10309 5' -51.5 NC_002687.1 + 26350 0.68 0.995774
Target:  5'- --cGGCCGUccUUUaCACGAAGGCCu--- -3'
miRNA:   3'- ucaCCGGCG--AAA-GUGCUUUCGGuucu -5'
10309 5' -51.5 NC_002687.1 + 38050 0.67 0.998113
Target:  5'- -cUGGCCGUUUUCAgagauCGAAAGCagcGAc -3'
miRNA:   3'- ucACCGGCGAAAGU-----GCUUUCGguuCU- -5'
10309 5' -51.5 NC_002687.1 + 42358 0.72 0.945118
Target:  5'- uGGUGGCuCGCggagUUCGCGGAcgguGCCAAc- -3'
miRNA:   3'- -UCACCG-GCGa---AAGUGCUUu---CGGUUcu -5'
10309 5' -51.5 NC_002687.1 + 67213 1.09 0.014609
Target:  5'- cAGUGGCCGCUUUCACGAAAGCCAAGAu -3'
miRNA:   3'- -UCACCGGCGAAAGUGCUUUCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 71702 0.67 0.996372
Target:  5'- --cGGCCGUggaacCACGGAcacuaGGCCGGGGg -3'
miRNA:   3'- ucaCCGGCGaaa--GUGCUU-----UCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 72149 0.7 0.984254
Target:  5'- aGGcUGuGCCGCUUgauaGCGAu-GCCAAGAc -3'
miRNA:   3'- -UC-AC-CGGCGAAag--UGCUuuCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 87484 0.69 0.991465
Target:  5'- -aUGGCCGggUUCAuCGggGGCguGGGa -3'
miRNA:   3'- ucACCGGCgaAAGU-GCuuUCGguUCU- -5'
10309 5' -51.5 NC_002687.1 + 89682 0.67 0.997763
Target:  5'- --aGGCCGCgaUCAUGGAuGCCGu-- -3'
miRNA:   3'- ucaCCGGCGaaAGUGCUUuCGGUucu -5'
10309 5' -51.5 NC_002687.1 + 99424 0.71 0.964235
Target:  5'- cGUGGgUGCcggUCAUGAGGGCCAuGAu -3'
miRNA:   3'- uCACCgGCGaa-AGUGCUUUCGGUuCU- -5'
10309 5' -51.5 NC_002687.1 + 100689 0.67 0.998113
Target:  5'- --gGGCCGCUcUCAaccacucggaaGGAGGCCAuGGAa -3'
miRNA:   3'- ucaCCGGCGAaAGUg----------CUUUCGGU-UCU- -5'
10309 5' -51.5 NC_002687.1 + 103017 0.69 0.987551
Target:  5'- --aGGCCGCcaaggcCACGAAggcugcAGCCAAGGc -3'
miRNA:   3'- ucaCCGGCGaaa---GUGCUU------UCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 105755 0.67 0.998113
Target:  5'- aGGUGGCUGuCUUgcgagcguuaUCGCGGAGGCUc--- -3'
miRNA:   3'- -UCACCGGC-GAA----------AGUGCUUUCGGuucu -5'
10309 5' -51.5 NC_002687.1 + 108403 0.67 0.997763
Target:  5'- aAGUGGCUGCggUCACcauGGAuguacaCCAAGAa -3'
miRNA:   3'- -UCACCGGCGaaAGUG---CUUuc----GGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 109904 0.69 0.987551
Target:  5'- cGGUGGCC-UUUUCcCGAAcaagaguuuuugGGCCGAGGa -3'
miRNA:   3'- -UCACCGGcGAAAGuGCUU------------UCGGUUCU- -5'
10309 5' -51.5 NC_002687.1 + 125929 0.66 0.999388
Target:  5'- uGGUGGCUGCUgcuauuucaUCAgGAGAcacGCCAAc- -3'
miRNA:   3'- -UCACCGGCGAa--------AGUgCUUU---CGGUUcu -5'
10309 5' -51.5 NC_002687.1 + 159228 0.72 0.945118
Target:  5'- cGUGGuaGCUUUCACGuuGGCCu--- -3'
miRNA:   3'- uCACCggCGAAAGUGCuuUCGGuucu -5'
10309 5' -51.5 NC_002687.1 + 164839 0.66 0.9989
Target:  5'- aAGUGGCCGaccaUCuCGAGAucaCCAAGAa -3'
miRNA:   3'- -UCACCGGCgaa-AGuGCUUUc--GGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.