Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10309 | 5' | -51.5 | NC_002687.1 | + | 99424 | 0.71 | 0.964235 |
Target: 5'- cGUGGgUGCcggUCAUGAGGGCCAuGAu -3' miRNA: 3'- uCACCgGCGaa-AGUGCUUUCGGUuCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 89682 | 0.67 | 0.997763 |
Target: 5'- --aGGCCGCgaUCAUGGAuGCCGu-- -3' miRNA: 3'- ucaCCGGCGaaAGUGCUUuCGGUucu -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 167153 | 0.67 | 0.997763 |
Target: 5'- cGGUGGCCaGC-UUCACGAAGaauaCgCGAGAc -3' miRNA: 3'- -UCACCGG-CGaAAGUGCUUUc---G-GUUCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 181306 | 0.66 | 0.999388 |
Target: 5'- --cGGCCGCUUUCGuCGuGAGCgCGu-- -3' miRNA: 3'- ucaCCGGCGAAAGU-GCuUUCG-GUucu -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 103017 | 0.69 | 0.987551 |
Target: 5'- --aGGCCGCcaaggcCACGAAggcugcAGCCAAGGc -3' miRNA: 3'- ucaCCGGCGaaa---GUGCUU------UCGGUUCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 109904 | 0.69 | 0.987551 |
Target: 5'- cGGUGGCC-UUUUCcCGAAcaagaguuuuugGGCCGAGGa -3' miRNA: 3'- -UCACCGGcGAAAGuGCUU------------UCGGUUCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 217283 | 0.74 | 0.896244 |
Target: 5'- -uUGGCCGaCUUUCugGAA-GCCGGGc -3' miRNA: 3'- ucACCGGC-GAAAGugCUUuCGGUUCu -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 10370 | 0.73 | 0.90873 |
Target: 5'- gAGUGGCUGCgg-CgACGggGGUgGAGAa -3' miRNA: 3'- -UCACCGGCGaaaG-UGCuuUCGgUUCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 181057 | 0.72 | 0.953431 |
Target: 5'- ---aGCCGaugcagcucgUUCACGAAGGCCGAGAg -3' miRNA: 3'- ucacCGGCga--------AAGUGCUUUCGGUUCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 10184 | 0.67 | 0.997687 |
Target: 5'- uGUGGCCGCggUCAaauauccCCAAGAg -3' miRNA: 3'- uCACCGGCGaaAGUgcuuuc-GGUUCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 225368 | 0.68 | 0.995097 |
Target: 5'- gGGUGGCaCGagaggUCAUGcAGGCCAAGc -3' miRNA: 3'- -UCACCG-GCgaa--AGUGCuUUCGGUUCu -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 25374 | 0.68 | 0.994255 |
Target: 5'- uGUGGCCGCcugcgUCACGAucacgaaAAGCaauacCAAGGa -3' miRNA: 3'- uCACCGGCGaa---AGUGCU-------UUCG-----GUUCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 234195 | 0.7 | 0.975728 |
Target: 5'- aAGUGGCCGCUgau-CGGAAGCaacgCGAGc -3' miRNA: 3'- -UCACCGGCGAaaguGCUUUCG----GUUCu -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 26350 | 0.68 | 0.995774 |
Target: 5'- --cGGCCGUccUUUaCACGAAGGCCu--- -3' miRNA: 3'- ucaCCGGCG--AAA-GUGCUUUCGGuucu -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 72149 | 0.7 | 0.984254 |
Target: 5'- aGGcUGuGCCGCUUgauaGCGAu-GCCAAGAc -3' miRNA: 3'- -UC-AC-CGGCGAAag--UGCUuuCGGUUCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 312766 | 0.68 | 0.993482 |
Target: 5'- -aUGGCCGCcgUCGCGGAuaccuguGCCAc-- -3' miRNA: 3'- ucACCGGCGaaAGUGCUUu------CGGUucu -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 240303 | 0.68 | 0.995774 |
Target: 5'- ----aCCGCUUUCACGAGaaagGGCCAcGAc -3' miRNA: 3'- ucaccGGCGAAAGUGCUU----UCGGUuCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 200483 | 0.67 | 0.997763 |
Target: 5'- uGUGGauacaCCGCUcuuuuuUUCGCGAAAGaCAGGGa -3' miRNA: 3'- uCACC-----GGCGA------AAGUGCUUUCgGUUCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 280967 | 0.69 | 0.985977 |
Target: 5'- gGGUGGCgGCa---GCGgcGGCCGGGGu -3' miRNA: 3'- -UCACCGgCGaaagUGCuuUCGGUUCU- -5' |
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10309 | 5' | -51.5 | NC_002687.1 | + | 260041 | 0.69 | 0.991465 |
Target: 5'- cGGUgGGCCGCggUUUACGA--GCaCAGGAu -3' miRNA: 3'- -UCA-CCGGCGa-AAGUGCUuuCG-GUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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