miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10310 3' -56.6 NC_002687.1 + 69427 1.08 0.006768
Target:  5'- uCUGAAACACUGGCGGCACCGCCGACAc -3'
miRNA:   3'- -GACUUUGUGACCGCCGUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 309925 0.89 0.108292
Target:  5'- uUGcAGCGCgGGCGGCACCGCCGACGu -3'
miRNA:   3'- gACuUUGUGaCCGCCGUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 124078 0.79 0.41158
Target:  5'- -aGAAAguCUGGuCGGCACCuGCCGACGu -3'
miRNA:   3'- gaCUUUguGACC-GCCGUGG-CGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 97825 0.76 0.564329
Target:  5'- gCUG--GCACUGcUGGCACCGCUGGCAc -3'
miRNA:   3'- -GACuuUGUGACcGCCGUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 78396 0.75 0.577753
Target:  5'- uUGAGGCGCUGGUugaagGcuguguugaucucguGCACCGCCGACGg -3'
miRNA:   3'- gACUUUGUGACCG-----C---------------CGUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 311449 0.75 0.583528
Target:  5'- -cGAAGCAUgUGGCGGCGCUGgCGGCc -3'
miRNA:   3'- gaCUUUGUG-ACCGCCGUGGCgGCUGu -5'
10310 3' -56.6 NC_002687.1 + 276727 0.75 0.622257
Target:  5'- gCUGggGCugUGGCGGCugCGUguccguguCGugGa -3'
miRNA:   3'- -GACuuUGugACCGCCGugGCG--------GCugU- -5'
10310 3' -56.6 NC_002687.1 + 254869 0.74 0.670764
Target:  5'- gCUGAGGCAgaUGGCGGCcUUGUCGGCAu -3'
miRNA:   3'- -GACUUUGUg-ACCGCCGuGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 29593 0.74 0.68041
Target:  5'- uUGGuuguAUGCUGGUGGCGcucggaaggucuCCGCCGACAc -3'
miRNA:   3'- gACUu---UGUGACCGCCGU------------GGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 224109 0.73 0.718557
Target:  5'- -cGGGACGCggUGGCGGUGgCGCUGGCGc -3'
miRNA:   3'- gaCUUUGUG--ACCGCCGUgGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 309559 0.72 0.737261
Target:  5'- aUGGAACGucGGCGGUGCCGCCcGCGc -3'
miRNA:   3'- gACUUUGUgaCCGCCGUGGCGGcUGU- -5'
10310 3' -56.6 NC_002687.1 + 97749 0.72 0.755636
Target:  5'- gCUGAAGCGUUGGCGGCGuggauguucucgUUGCUGGCAc -3'
miRNA:   3'- -GACUUUGUGACCGCCGU------------GGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 158842 0.72 0.76468
Target:  5'- -cGAAAgccCGgaGGCGGCgGCCGUCGACAa -3'
miRNA:   3'- gaCUUU---GUgaCCGCCG-UGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 145732 0.71 0.799718
Target:  5'- -gGAGACuACUGG-GcGCugGCCGCCGACAa -3'
miRNA:   3'- gaCUUUG-UGACCgC-CG--UGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 85723 0.71 0.808154
Target:  5'- -cGAAAgGCcGGUGGCAcCCGCCGGa- -3'
miRNA:   3'- gaCUUUgUGaCCGCCGU-GGCGGCUgu -5'
10310 3' -56.6 NC_002687.1 + 35825 0.71 0.808154
Target:  5'- gUGAGGCAggGGCgGGCAuCUGCCGAUg -3'
miRNA:   3'- gACUUUGUgaCCG-CCGU-GGCGGCUGu -5'
10310 3' -56.6 NC_002687.1 + 262267 0.71 0.832573
Target:  5'- -cGAcACAUUGGCaGCACCGuuGAUc -3'
miRNA:   3'- gaCUuUGUGACCGcCGUGGCggCUGu -5'
10310 3' -56.6 NC_002687.1 + 313753 0.7 0.840393
Target:  5'- --cAAGCuaugaUGGCGGCGgUGCCGACAg -3'
miRNA:   3'- gacUUUGug---ACCGCCGUgGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 307021 0.7 0.840393
Target:  5'- -aGAAAC-CUGGCGGCAuCCG-CGAUc -3'
miRNA:   3'- gaCUUUGuGACCGCCGU-GGCgGCUGu -5'
10310 3' -56.6 NC_002687.1 + 115528 0.7 0.840393
Target:  5'- -cGGAGCuCUGGCGuGCGuuGCgGACGg -3'
miRNA:   3'- gaCUUUGuGACCGC-CGUggCGgCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.