miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10310 3' -56.6 NC_002687.1 + 21848 0.66 0.971047
Target:  5'- ----cACGCUGGCGGCGggggaacCUGUgGACAu -3'
miRNA:   3'- gacuuUGUGACCGCCGU-------GGCGgCUGU- -5'
10310 3' -56.6 NC_002687.1 + 29593 0.74 0.68041
Target:  5'- uUGGuuguAUGCUGGUGGCGcucggaaggucuCCGCCGACAc -3'
miRNA:   3'- gACUu---UGUGACCGCCGU------------GGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 35825 0.71 0.808154
Target:  5'- gUGAGGCAggGGCgGGCAuCUGCCGAUg -3'
miRNA:   3'- gACUUUGUgaCCG-CCGU-GGCGGCUGu -5'
10310 3' -56.6 NC_002687.1 + 57711 0.66 0.976343
Target:  5'- uUGAAAcCAUUcGGCGGCgcacggacACCGCCcGCGa -3'
miRNA:   3'- gACUUU-GUGA-CCGCCG--------UGGCGGcUGU- -5'
10310 3' -56.6 NC_002687.1 + 60181 0.66 0.976343
Target:  5'- aUGGAACAC-GGCGG-ACUGCCa--- -3'
miRNA:   3'- gACUUUGUGaCCGCCgUGGCGGcugu -5'
10310 3' -56.6 NC_002687.1 + 68412 0.66 0.968535
Target:  5'- -cGAAACccugaUGGUGGCACCcgguGCCGuCAc -3'
miRNA:   3'- gaCUUUGug---ACCGCCGUGG----CGGCuGU- -5'
10310 3' -56.6 NC_002687.1 + 69427 1.08 0.006768
Target:  5'- uCUGAAACACUGGCGGCACCGCCGACAc -3'
miRNA:   3'- -GACUUUGUGACCGCCGUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 78396 0.75 0.577753
Target:  5'- uUGAGGCGCUGGUugaagGcuguguugaucucguGCACCGCCGACGg -3'
miRNA:   3'- gACUUUGUGACCG-----C---------------CGUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 79428 0.68 0.938745
Target:  5'- -aGAGACAUUGGUGaGUgugugucuguuuuGCCGUCGAUAc -3'
miRNA:   3'- gaCUUUGUGACCGC-CG-------------UGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 83575 0.66 0.962406
Target:  5'- uUGAGAUugUaGGUGGCgACgGCgCGACGc -3'
miRNA:   3'- gACUUUGugA-CCGCCG-UGgCG-GCUGU- -5'
10310 3' -56.6 NC_002687.1 + 85713 0.66 0.971317
Target:  5'- gCUGGcccCACUGGCcccgcuGGCcCCGCUGGCc -3'
miRNA:   3'- -GACUuu-GUGACCG------CCGuGGCGGCUGu -5'
10310 3' -56.6 NC_002687.1 + 85723 0.71 0.808154
Target:  5'- -cGAAAgGCcGGUGGCAcCCGCCGGa- -3'
miRNA:   3'- gaCUUUgUGaCCGCCGU-GGCGGCUgu -5'
10310 3' -56.6 NC_002687.1 + 88942 0.67 0.955493
Target:  5'- aUGAAcuaaucugcGCGCUGGCGcGgGCCGCgaguucggCGGCAg -3'
miRNA:   3'- gACUU---------UGUGACCGC-CgUGGCG--------GCUGU- -5'
10310 3' -56.6 NC_002687.1 + 97749 0.72 0.755636
Target:  5'- gCUGAAGCGUUGGCGGCGuggauguucucgUUGCUGGCAc -3'
miRNA:   3'- -GACUUUGUGACCGCCGU------------GGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 97790 0.66 0.971317
Target:  5'- gCUGGcacCGCUGGCccaccGGCACCaUCGGCAc -3'
miRNA:   3'- -GACUuu-GUGACCG-----CCGUGGcGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 97825 0.76 0.564329
Target:  5'- gCUG--GCACUGcUGGCACCGCUGGCAc -3'
miRNA:   3'- -GACuuUGUGACcGCCGUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 106744 0.69 0.883533
Target:  5'- gUGAuauCACUGGUGGaAUUGCUGACAu -3'
miRNA:   3'- gACUuu-GUGACCGCCgUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 115528 0.7 0.840393
Target:  5'- -cGGAGCuCUGGCGuGCGuuGCgGACGg -3'
miRNA:   3'- gaCUUUGuGACCGC-CGUggCGgCUGU- -5'
10310 3' -56.6 NC_002687.1 + 119130 0.67 0.95694
Target:  5'- uCUGAcACGgaGGCuguguugucguucuuGGCGCCGuCCGACc -3'
miRNA:   3'- -GACUuUGUgaCCG---------------CCGUGGC-GGCUGu -5'
10310 3' -56.6 NC_002687.1 + 124078 0.79 0.41158
Target:  5'- -aGAAAguCUGGuCGGCACCuGCCGACGu -3'
miRNA:   3'- gaCUUUguGACC-GCCGUGG-CGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.