miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10310 3' -56.6 NC_002687.1 + 97825 0.76 0.564329
Target:  5'- gCUG--GCACUGcUGGCACCGCUGGCAc -3'
miRNA:   3'- -GACuuUGUGACcGCCGUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 224851 0.67 0.955493
Target:  5'- -aGAGcCGCcgacGCGGCGgCGCCGGCAc -3'
miRNA:   3'- gaCUUuGUGac--CGCCGUgGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 249621 0.67 0.955858
Target:  5'- aUGAAGCACcguccaugugggcugGGCguucaGGCACUGCaCGACGu -3'
miRNA:   3'- gACUUUGUGa--------------CCG-----CCGUGGCG-GCUGU- -5'
10310 3' -56.6 NC_002687.1 + 60181 0.66 0.976343
Target:  5'- aUGGAACAC-GGCGG-ACUGCCa--- -3'
miRNA:   3'- gACUUUGUGaCCGCCgUGGCGGcugu -5'
10310 3' -56.6 NC_002687.1 + 97749 0.72 0.755636
Target:  5'- gCUGAAGCGUUGGCGGCGuggauguucucgUUGCUGGCAc -3'
miRNA:   3'- -GACUUUGUGACCGCCGU------------GGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 158842 0.72 0.76468
Target:  5'- -cGAAAgccCGgaGGCGGCgGCCGUCGACAa -3'
miRNA:   3'- gaCUUU---GUgaCCGCCG-UGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 307021 0.7 0.840393
Target:  5'- -aGAAAC-CUGGCGGCAuCCG-CGAUc -3'
miRNA:   3'- gaCUUUGuGACCGCCGU-GGCgGCUGu -5'
10310 3' -56.6 NC_002687.1 + 313753 0.7 0.840393
Target:  5'- --cAAGCuaugaUGGCGGCGgUGCCGACAg -3'
miRNA:   3'- gacUUUGug---ACCGCCGUgGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 158798 0.69 0.902455
Target:  5'- gUGAuGCAC-GGCGGCgacaacgacggACCGCCGuCGc -3'
miRNA:   3'- gACUuUGUGaCCGCCG-----------UGGCGGCuGU- -5'
10310 3' -56.6 NC_002687.1 + 164274 0.67 0.947764
Target:  5'- --cAAGCGCauucagUGGCGGCAUCGgcaCCGGCAc -3'
miRNA:   3'- gacUUUGUG------ACCGCCGUGGC---GGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 294018 0.68 0.934592
Target:  5'- -gGGAACcCUGGCGG-ACCGaCUGGCu -3'
miRNA:   3'- gaCUUUGuGACCGCCgUGGC-GGCUGu -5'
10310 3' -56.6 NC_002687.1 + 226533 0.7 0.855515
Target:  5'- gCUGGGACuGCUGGaCGGCugggACCGCUGGg- -3'
miRNA:   3'- -GACUUUG-UGACC-GCCG----UGGCGGCUgu -5'
10310 3' -56.6 NC_002687.1 + 276727 0.75 0.622257
Target:  5'- gCUGggGCugUGGCGGCugCGUguccguguCGugGa -3'
miRNA:   3'- -GACuuUGugACCGCCGugGCG--------GCugU- -5'
10310 3' -56.6 NC_002687.1 + 207766 0.67 0.947764
Target:  5'- -aGAGguACACguggaagagGGUGGgcaaUACCGCCGACAa -3'
miRNA:   3'- gaCUU--UGUGa--------CCGCC----GUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 224109 0.73 0.718557
Target:  5'- -cGGGACGCggUGGCGGUGgCGCUGGCGc -3'
miRNA:   3'- gaCUUUGUG--ACCGCCGUgGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 224153 0.7 0.848042
Target:  5'- gCUGGcgcuGGCGCUGGCGGUGgCGgUGGCGg -3'
miRNA:   3'- -GACU----UUGUGACCGCCGUgGCgGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 271279 0.67 0.947764
Target:  5'- uUGAAaaaACACUGaGCGGUGCUauaacuggaGCUGGCAa -3'
miRNA:   3'- gACUU---UGUGAC-CGCCGUGG---------CGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 300221 0.67 0.955493
Target:  5'- aUGAGGCACcguUGGUaccgcuucCACCGCCGACu -3'
miRNA:   3'- gACUUUGUG---ACCGcc------GUGGCGGCUGu -5'
10310 3' -56.6 NC_002687.1 + 309559 0.72 0.737261
Target:  5'- aUGGAACGucGGCGGUGCCGCCcGCGc -3'
miRNA:   3'- gACUUUGUgaCCGCCGUGGCGGcUGU- -5'
10310 3' -56.6 NC_002687.1 + 145732 0.71 0.799718
Target:  5'- -gGAGACuACUGG-GcGCugGCCGCCGACAa -3'
miRNA:   3'- gaCUUUG-UGACCgC-CG--UGGCGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.