miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10310 5' -56 NC_002687.1 + 69393 1.1 0.006364
Target:  5'- cACCGCCGCCACCAUCGCCAACAUUGGu -3'
miRNA:   3'- -UGGCGGCGGUGGUAGCGGUUGUAACC- -5'
10310 5' -56 NC_002687.1 + 307268 0.86 0.191913
Target:  5'- cACCGCCGCCGCCcgUGCCAGCAc--- -3'
miRNA:   3'- -UGGCGGCGGUGGuaGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 166297 0.78 0.475393
Target:  5'- gGCCGCCGCCGCguUUGCCGcgucgACAgagGGg -3'
miRNA:   3'- -UGGCGGCGGUGguAGCGGU-----UGUaa-CC- -5'
10310 5' -56 NC_002687.1 + 241519 0.77 0.558658
Target:  5'- -aCGCCGCCACCGUUGgCCAccGCGgcgGGg -3'
miRNA:   3'- ugGCGGCGGUGGUAGC-GGU--UGUaa-CC- -5'
10310 5' -56 NC_002687.1 + 241885 0.76 0.60672
Target:  5'- aACC-CCGCCGCgGUgGCCAACggUGGc -3'
miRNA:   3'- -UGGcGGCGGUGgUAgCGGUUGuaACC- -5'
10310 5' -56 NC_002687.1 + 30364 0.76 0.60672
Target:  5'- uACaCGCCGCCGCCaAUCGUCAcCGcUGGa -3'
miRNA:   3'- -UG-GCGGCGGUGG-UAGCGGUuGUaACC- -5'
10310 5' -56 NC_002687.1 + 224515 0.75 0.626106
Target:  5'- cACCGCCaCCGCCAgCGCCAGCGc--- -3'
miRNA:   3'- -UGGCGGcGGUGGUaGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 224485 0.75 0.626106
Target:  5'- cACCGCCaCCGCCAgCGCCAGCGc--- -3'
miRNA:   3'- -UGGCGGcGGUGGUaGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 314108 0.75 0.631927
Target:  5'- cACCGCCGCCAUCAUagcuuggcggauaGCCAucaaAUUGGu -3'
miRNA:   3'- -UGGCGGCGGUGGUAg------------CGGUug--UAACC- -5'
10310 5' -56 NC_002687.1 + 292436 0.75 0.635808
Target:  5'- cGCCGCgGCCGCCAcCGCUuccaGUUGGc -3'
miRNA:   3'- -UGGCGgCGGUGGUaGCGGuug-UAACC- -5'
10310 5' -56 NC_002687.1 + 72914 0.75 0.655198
Target:  5'- cGCCGCCGCCGCCGacacacCGCCgAGCAg--- -3'
miRNA:   3'- -UGGCGGCGGUGGUa-----GCGG-UUGUaacc -5'
10310 5' -56 NC_002687.1 + 298061 0.75 0.664872
Target:  5'- cGCgGCCGCCGCCGcgCGCguGC-UUGGa -3'
miRNA:   3'- -UGgCGGCGGUGGUa-GCGguUGuAACC- -5'
10310 5' -56 NC_002687.1 + 281318 0.74 0.68414
Target:  5'- cGCCGCUGCCGCCAcccaggccccCGCCGACGcUGc -3'
miRNA:   3'- -UGGCGGCGGUGGUa---------GCGGUUGUaACc -5'
10310 5' -56 NC_002687.1 + 10679 0.74 0.69372
Target:  5'- uGCCGCCGCCACUGcCGCCGcCAcUGc -3'
miRNA:   3'- -UGGCGGCGGUGGUaGCGGUuGUaACc -5'
10310 5' -56 NC_002687.1 + 120000 0.74 0.703254
Target:  5'- uCUGCCG-CGCCAUCGUCGACAaucaggacgUUGGa -3'
miRNA:   3'- uGGCGGCgGUGGUAGCGGUUGU---------AACC- -5'
10310 5' -56 NC_002687.1 + 215633 0.74 0.703254
Target:  5'- cGCCGUCGCCgaGCCuAUCGCCGuguCAaUGGu -3'
miRNA:   3'- -UGGCGGCGG--UGG-UAGCGGUu--GUaACC- -5'
10310 5' -56 NC_002687.1 + 307292 0.73 0.759052
Target:  5'- cACCaCCGCCACCGcCGCCGAUcuccaUGGg -3'
miRNA:   3'- -UGGcGGCGGUGGUaGCGGUUGua---ACC- -5'
10310 5' -56 NC_002687.1 + 100670 0.73 0.759052
Target:  5'- uGCCGCCuUCACCGUCGgCGACGcgcaaacgauaUUGGa -3'
miRNA:   3'- -UGGCGGcGGUGGUAGCgGUUGU-----------AACC- -5'
10310 5' -56 NC_002687.1 + 182386 0.73 0.776928
Target:  5'- gGCaCGCUGCCGUCAUCGCCGAUAg--- -3'
miRNA:   3'- -UG-GCGGCGGUGGUAGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 18932 0.72 0.794338
Target:  5'- cCC-CCGCCGCCAUCGCguGCAc--- -3'
miRNA:   3'- uGGcGGCGGUGGUAGCGguUGUaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.