miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10310 5' -56 NC_002687.1 + 307268 0.86 0.191913
Target:  5'- cACCGCCGCCGCCcgUGCCAGCAc--- -3'
miRNA:   3'- -UGGCGGCGGUGGuaGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 81502 0.7 0.898519
Target:  5'- cGCCGUCGgCACCAUCGUaAACAg--- -3'
miRNA:   3'- -UGGCGGCgGUGGUAGCGgUUGUaacc -5'
10310 5' -56 NC_002687.1 + 123213 0.7 0.904538
Target:  5'- cACCGUCGCCACaCGcgacgcUCGCgcucaaGAUAUUGGa -3'
miRNA:   3'- -UGGCGGCGGUG-GU------AGCGg-----UUGUAACC- -5'
10310 5' -56 NC_002687.1 + 93000 0.66 0.984951
Target:  5'- aGCCuUCGaCCAUgGUCGCCAACAa--- -3'
miRNA:   3'- -UGGcGGC-GGUGgUAGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 120000 0.74 0.703254
Target:  5'- uCUGCCG-CGCCAUCGUCGACAaucaggacgUUGGa -3'
miRNA:   3'- uGGCGGCgGUGGUAGCGGUUGU---------AACC- -5'
10310 5' -56 NC_002687.1 + 100670 0.73 0.759052
Target:  5'- uGCCGCCuUCACCGUCGgCGACGcgcaaacgauaUUGGa -3'
miRNA:   3'- -UGGCGGcGGUGGUAGCgGUUGU-----------AACC- -5'
10310 5' -56 NC_002687.1 + 307335 0.72 0.811222
Target:  5'- uCCGUCGUCACCAcUGCCuuCGUUGa -3'
miRNA:   3'- uGGCGGCGGUGGUaGCGGuuGUAACc -5'
10310 5' -56 NC_002687.1 + 268125 0.71 0.835436
Target:  5'- uGCUGCauacaaGCCACCGUUuCCGGCAaUGGg -3'
miRNA:   3'- -UGGCGg-----CGGUGGUAGcGGUUGUaACC- -5'
10310 5' -56 NC_002687.1 + 154189 0.71 0.858157
Target:  5'- cGCCaaCGCUuCCGUCGCCAAUcUUGGu -3'
miRNA:   3'- -UGGcgGCGGuGGUAGCGGUUGuAACC- -5'
10310 5' -56 NC_002687.1 + 307453 0.7 0.898519
Target:  5'- cACCGCCGUCACCGcCGUCccCAUcaguguccaUGGg -3'
miRNA:   3'- -UGGCGGCGGUGGUaGCGGuuGUA---------ACC- -5'
10310 5' -56 NC_002687.1 + 130367 0.7 0.879227
Target:  5'- cACCGCCaccaCCACCAcCGCCAGCu---- -3'
miRNA:   3'- -UGGCGGc---GGUGGUaGCGGUUGuaacc -5'
10310 5' -56 NC_002687.1 + 61511 0.71 0.85076
Target:  5'- -aCGCCGUCGCaCGUCGCCAGagagGUUGu -3'
miRNA:   3'- ugGCGGCGGUG-GUAGCGGUUg---UAACc -5'
10310 5' -56 NC_002687.1 + 241519 0.77 0.558658
Target:  5'- -aCGCCGCCACCGUUGgCCAccGCGgcgGGg -3'
miRNA:   3'- ugGCGGCGGUGGUAGC-GGU--UGUaa-CC- -5'
10310 5' -56 NC_002687.1 + 211766 0.7 0.88586
Target:  5'- uUCGUCGCCGUCGUCGgCCGACGccUGGa -3'
miRNA:   3'- uGGCGGCGGUGGUAGC-GGUUGUa-ACC- -5'
10310 5' -56 NC_002687.1 + 292436 0.75 0.635808
Target:  5'- cGCCGCgGCCGCCAcCGCUuccaGUUGGc -3'
miRNA:   3'- -UGGCGgCGGUGGUaGCGGuug-UAACC- -5'
10310 5' -56 NC_002687.1 + 212346 0.71 0.835436
Target:  5'- --gGCuCGCCACCGUCGaCAGCggUGGu -3'
miRNA:   3'- uggCG-GCGGUGGUAGCgGUUGuaACC- -5'
10310 5' -56 NC_002687.1 + 296983 0.7 0.898519
Target:  5'- uCCGCCGaCACCAUCGCgcGCGUccucggUGGc -3'
miRNA:   3'- uGGCGGCgGUGGUAGCGguUGUA------ACC- -5'
10310 5' -56 NC_002687.1 + 7554 0.7 0.904538
Target:  5'- uGCCuuCCGCCACCGUCGUCGuuugaagGGg -3'
miRNA:   3'- -UGGc-GGCGGUGGUAGCGGUuguaa--CC- -5'
10310 5' -56 NC_002687.1 + 298061 0.75 0.664872
Target:  5'- cGCgGCCGCCGCCGcgCGCguGC-UUGGa -3'
miRNA:   3'- -UGgCGGCGGUGGUa-GCGguUGuAACC- -5'
10310 5' -56 NC_002687.1 + 307292 0.73 0.759052
Target:  5'- cACCaCCGCCACCGcCGCCGAUcuccaUGGg -3'
miRNA:   3'- -UGGcGGCGGUGGUaGCGGUUGua---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.