miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10310 5' -56 NC_002687.1 + 7554 0.7 0.904538
Target:  5'- uGCCuuCCGCCACCGUCGUCGuuugaagGGg -3'
miRNA:   3'- -UGGc-GGCGGUGGUAGCGGUuguaa--CC- -5'
10310 5' -56 NC_002687.1 + 10394 0.71 0.858157
Target:  5'- uGCUGCUGCCACCAcuuccgCGCCAuccGCAg--- -3'
miRNA:   3'- -UGGCGGCGGUGGUa-----GCGGU---UGUaacc -5'
10310 5' -56 NC_002687.1 + 10531 0.66 0.983214
Target:  5'- gACCGCgGCCACauacagcaUAUCGCaAACGgugcUGGg -3'
miRNA:   3'- -UGGCGgCGGUG--------GUAGCGgUUGUa---ACC- -5'
10310 5' -56 NC_002687.1 + 10679 0.74 0.69372
Target:  5'- uGCCGCCGCCACUGcCGCCGcCAcUGc -3'
miRNA:   3'- -UGGCGGCGGUGGUaGCGGUuGUaACc -5'
10310 5' -56 NC_002687.1 + 11767 0.67 0.972187
Target:  5'- uGCCGCUGCUGCCAcCGCUAcCGcUGc -3'
miRNA:   3'- -UGGCGGCGGUGGUaGCGGUuGUaACc -5'
10310 5' -56 NC_002687.1 + 18119 0.66 0.984951
Target:  5'- aGCCGCUGCggCugCAaCGCuUAGCAUUGa -3'
miRNA:   3'- -UGGCGGCG--GugGUaGCG-GUUGUAACc -5'
10310 5' -56 NC_002687.1 + 18602 0.69 0.910347
Target:  5'- aGCUGCCGCCACgGgguUCGCCGgugcuGCGacGGu -3'
miRNA:   3'- -UGGCGGCGGUGgU---AGCGGU-----UGUaaCC- -5'
10310 5' -56 NC_002687.1 + 18932 0.72 0.794338
Target:  5'- cCC-CCGCCGCCAUCGCguGCAc--- -3'
miRNA:   3'- uGGcGGCGGUGGUAGCGguUGUaacc -5'
10310 5' -56 NC_002687.1 + 22197 0.66 0.984951
Target:  5'- cCCGCCGCCAgCGUgugCGCacgaAGCAUg-- -3'
miRNA:   3'- uGGCGGCGGUgGUA---GCGg---UUGUAacc -5'
10310 5' -56 NC_002687.1 + 29029 0.66 0.983214
Target:  5'- gAUCGCUGCCAUugcaagcaCGUCGuCCAGCAaUGcGg -3'
miRNA:   3'- -UGGCGGCGGUG--------GUAGC-GGUUGUaAC-C- -5'
10310 5' -56 NC_002687.1 + 30364 0.76 0.60672
Target:  5'- uACaCGCCGCCGCCaAUCGUCAcCGcUGGa -3'
miRNA:   3'- -UG-GCGGCGGUGG-UAGCGGUuGUaACC- -5'
10310 5' -56 NC_002687.1 + 36075 0.66 0.974726
Target:  5'- cCCgGCCGCCACCAUUGCgCuguCAa--- -3'
miRNA:   3'- uGG-CGGCGGUGGUAGCG-Guu-GUaacc -5'
10310 5' -56 NC_002687.1 + 45307 0.68 0.940711
Target:  5'- gACCGUCGuCCACUggAUCaaggGCCAACGaugUGGg -3'
miRNA:   3'- -UGGCGGC-GGUGG--UAG----CGGUUGUa--ACC- -5'
10310 5' -56 NC_002687.1 + 56554 0.66 0.977093
Target:  5'- -gCGUCGCCACCAcacaGCCcguuGACGggGGa -3'
miRNA:   3'- ugGCGGCGGUGGUag--CGG----UUGUaaCC- -5'
10310 5' -56 NC_002687.1 + 61511 0.71 0.85076
Target:  5'- -aCGCCGUCGCaCGUCGCCAGagagGUUGu -3'
miRNA:   3'- ugGCGGCGGUG-GUAGCGGUUg---UAACc -5'
10310 5' -56 NC_002687.1 + 63408 0.7 0.903946
Target:  5'- gACCGCgGCCACCAagcaCGCCGGgccgauucuugucUcgUGGa -3'
miRNA:   3'- -UGGCGgCGGUGGUa---GCGGUU-------------GuaACC- -5'
10310 5' -56 NC_002687.1 + 69180 0.66 0.983214
Target:  5'- uACUGCUGUUGCgCGagcUUGCCGACAUcaUGGg -3'
miRNA:   3'- -UGGCGGCGGUG-GU---AGCGGUUGUA--ACC- -5'
10310 5' -56 NC_002687.1 + 69393 1.1 0.006364
Target:  5'- cACCGCCGCCACCAUCGCCAACAUUGGu -3'
miRNA:   3'- -UGGCGGCGGUGGUAGCGGUUGUAACC- -5'
10310 5' -56 NC_002687.1 + 72914 0.75 0.655198
Target:  5'- cGCCGCCGCCGCCGacacacCGCCgAGCAg--- -3'
miRNA:   3'- -UGGCGGCGGUGGUa-----GCGG-UUGUaacc -5'
10310 5' -56 NC_002687.1 + 72980 0.69 0.926494
Target:  5'- gUCGCCGUCACCGUCuCCGgaGCAUa-- -3'
miRNA:   3'- uGGCGGCGGUGGUAGcGGU--UGUAacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.