miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10313 3' -57.1 NC_002687.1 + 78084 1.06 0.006713
Target:  5'- gAAACGGCAGCACCCAAACCCGCACCAu -3'
miRNA:   3'- -UUUGCCGUCGUGGGUUUGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 303809 0.82 0.230273
Target:  5'- --cCGGCAGCACC---ACCCGCACCAa -3'
miRNA:   3'- uuuGCCGUCGUGGguuUGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 68404 0.8 0.283125
Target:  5'- uGAUGGUGGCACCCGGugCCGuCACCGu -3'
miRNA:   3'- uUUGCCGUCGUGGGUUugGGC-GUGGU- -5'
10313 3' -57.1 NC_002687.1 + 117582 0.77 0.441948
Target:  5'- cGAUGGCGaCGCCUAcACCCGCGCCGg -3'
miRNA:   3'- uUUGCCGUcGUGGGUuUGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 85716 0.73 0.650018
Target:  5'- --cCGGUGGCACCCGccggaccgacggGACCCGCgggACCGa -3'
miRNA:   3'- uuuGCCGUCGUGGGU------------UUGGGCG---UGGU- -5'
10313 3' -57.1 NC_002687.1 + 160311 0.73 0.650018
Target:  5'- uGGCGGCGGCugCCuuGgCCGCcCCGg -3'
miRNA:   3'- uUUGCCGUCGugGGuuUgGGCGuGGU- -5'
10313 3' -57.1 NC_002687.1 + 284304 0.72 0.698777
Target:  5'- --cCGGCAGCACCaGGGgCUGCGCCu -3'
miRNA:   3'- uuuGCCGUCGUGGgUUUgGGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 283169 0.72 0.698777
Target:  5'- --uCGGCAGCAUCCGAAgCgGCAgCAa -3'
miRNA:   3'- uuuGCCGUCGUGGGUUUgGgCGUgGU- -5'
10313 3' -57.1 NC_002687.1 + 241425 0.72 0.71702
Target:  5'- uGGACGGCAG-ACCCAAcuuucgcGCgUGCACCGu -3'
miRNA:   3'- -UUUGCCGUCgUGGGUU-------UGgGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 164286 0.7 0.782603
Target:  5'- --gUGGCGGCAUCgGcACCgGCACCGg -3'
miRNA:   3'- uuuGCCGUCGUGGgUuUGGgCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 65574 0.7 0.791403
Target:  5'- uGugGGCGGCACauGAugCCGUGCCGu -3'
miRNA:   3'- uUugCCGUCGUGggUUugGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 200478 0.7 0.800069
Target:  5'- cAACGGCGcGCGgCCGucgucGCCgGCACCAa -3'
miRNA:   3'- uUUGCCGU-CGUgGGUu----UGGgCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 255510 0.7 0.816975
Target:  5'- -cGCGGCGGCcCCCGuuGACCaCGCAUUc -3'
miRNA:   3'- uuUGCCGUCGuGGGU--UUGG-GCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 227150 0.7 0.825199
Target:  5'- --cCGGCaccGGCACCgGcACCgGCACCAc -3'
miRNA:   3'- uuuGCCG---UCGUGGgUuUGGgCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 309567 0.69 0.833262
Target:  5'- --uCGGCGGUGCC---GCCCGCGCUg -3'
miRNA:   3'- uuuGCCGUCGUGGguuUGGGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 212226 0.69 0.848874
Target:  5'- -uGCGGCguGGacgaGCCCAAGCCCGaGCCc -3'
miRNA:   3'- uuUGCCG--UCg---UGGGUUUGGGCgUGGu -5'
10313 3' -57.1 NC_002687.1 + 259849 0.69 0.856411
Target:  5'- aAGACGGCGGCGa-UGGACCCGUuguugGCCAu -3'
miRNA:   3'- -UUUGCCGUCGUggGUUUGGGCG-----UGGU- -5'
10313 3' -57.1 NC_002687.1 + 32033 0.69 0.863035
Target:  5'- uGACGGCGcuccgcaagugucGCACCUGAAagcgaCCGCGCCc -3'
miRNA:   3'- uUUGCCGU-------------CGUGGGUUUg----GGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 316176 0.69 0.870919
Target:  5'- cGGCGGCGGCACCCGG---CGCGgCGg -3'
miRNA:   3'- uUUGCCGUCGUGGGUUuggGCGUgGU- -5'
10313 3' -57.1 NC_002687.1 + 153815 0.69 0.870919
Target:  5'- -cGCGGUAGUguuCCUugguaaauAGACCCGCGCUAg -3'
miRNA:   3'- uuUGCCGUCGu--GGG--------UUUGGGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.