miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10313 3' -57.1 NC_002687.1 + 4805 0.67 0.935859
Target:  5'- -uACGuCGGCuCCCuguGCCCGCACUg -3'
miRNA:   3'- uuUGCcGUCGuGGGuu-UGGGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 5526 0.68 0.903661
Target:  5'- gGGACGaccaGCGGCGCUCAGACC-GCugCGa -3'
miRNA:   3'- -UUUGC----CGUCGUGGGUUUGGgCGugGU- -5'
10313 3' -57.1 NC_002687.1 + 6350 0.68 0.903661
Target:  5'- gGGACGaccaGCGGCGCUCAGACC-GCugCGa -3'
miRNA:   3'- -UUUGC----CGUCGUGGGUUUGGgCGugGU- -5'
10313 3' -57.1 NC_002687.1 + 8654 0.68 0.897532
Target:  5'- aAAACGGUgcccgccagcAGCAUCCGAcAgCUGCGCCAu -3'
miRNA:   3'- -UUUGCCG----------UCGUGGGUU-UgGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 10445 0.66 0.944834
Target:  5'- uAGCGGUAGCAucggcCUCGGGCCCGUugauGCUg -3'
miRNA:   3'- uUUGCCGUCGU-----GGGUUUGGGCG----UGGu -5'
10313 3' -57.1 NC_002687.1 + 18257 0.67 0.909575
Target:  5'- uGGCGGCAGCuucugguCCCAcACUCaCGCCGc -3'
miRNA:   3'- uUUGCCGUCGu------GGGUuUGGGcGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 32033 0.69 0.863035
Target:  5'- uGACGGCGcuccgcaagugucGCACCUGAAagcgaCCGCGCCc -3'
miRNA:   3'- uUUGCCGU-------------CGUGGGUUUg----GGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 41985 0.66 0.952944
Target:  5'- cGAACGGuUGGCACCguccgCGAACuCCGCgaGCCAc -3'
miRNA:   3'- -UUUGCC-GUCGUGG-----GUUUG-GGCG--UGGU- -5'
10313 3' -57.1 NC_002687.1 + 57701 0.68 0.903661
Target:  5'- --uCGGCGGCGCaCGGACaCCGC-CCGc -3'
miRNA:   3'- uuuGCCGUCGUGgGUUUG-GGCGuGGU- -5'
10313 3' -57.1 NC_002687.1 + 57858 0.66 0.956682
Target:  5'- gGGACGGCuuGUugCauu-CCCGCGCUAa -3'
miRNA:   3'- -UUUGCCGu-CGugGguuuGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 65574 0.7 0.791403
Target:  5'- uGugGGCGGCACauGAugCCGUGCCGu -3'
miRNA:   3'- uUugCCGUCGUGggUUugGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 68404 0.8 0.283125
Target:  5'- uGAUGGUGGCACCCGGugCCGuCACCGu -3'
miRNA:   3'- uUUGCCGUCGUGGGUUugGGC-GUGGU- -5'
10313 3' -57.1 NC_002687.1 + 78084 1.06 0.006713
Target:  5'- gAAACGGCAGCACCCAAACCCGCACCAu -3'
miRNA:   3'- -UUUGCCGUCGUGGGUUUGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 83014 0.67 0.909575
Target:  5'- -cGCGGCAGCuucACCguAACCUGUGCa- -3'
miRNA:   3'- uuUGCCGUCG---UGGguUUGGGCGUGgu -5'
10313 3' -57.1 NC_002687.1 + 84744 0.67 0.909575
Target:  5'- aAAACGaCGGCACCCAcgaccACCUGUACUu -3'
miRNA:   3'- -UUUGCcGUCGUGGGUu----UGGGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 85716 0.73 0.650018
Target:  5'- --cCGGUGGCACCCGccggaccgacggGACCCGCgggACCGa -3'
miRNA:   3'- uuuGCCGUCGUGGGU------------UUGGGCG---UGGU- -5'
10313 3' -57.1 NC_002687.1 + 85793 0.67 0.926006
Target:  5'- --cCGGCGGC-CCCuuaGGACCCugagggcccugaGCACCGg -3'
miRNA:   3'- uuuGCCGUCGuGGG---UUUGGG------------CGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 92832 0.67 0.926006
Target:  5'- gGAACGGCuuauauuagAGCAUCCGugaCCGaCACCGg -3'
miRNA:   3'- -UUUGCCG---------UCGUGGGUuugGGC-GUGGU- -5'
10313 3' -57.1 NC_002687.1 + 96945 0.66 0.959867
Target:  5'- gAAACGGCGuCGgUCGAugucgagGCCUGCACCGg -3'
miRNA:   3'- -UUUGCCGUcGUgGGUU-------UGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 117582 0.77 0.441948
Target:  5'- cGAUGGCGaCGCCUAcACCCGCGCCGg -3'
miRNA:   3'- uUUGCCGUcGUGGGUuUGGGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.