Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10313 | 3' | -57.1 | NC_002687.1 | + | 303809 | 0.82 | 0.230273 |
Target: 5'- --cCGGCAGCACC---ACCCGCACCAa -3' miRNA: 3'- uuuGCCGUCGUGGguuUGGGCGUGGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 300403 | 0.67 | 0.915271 |
Target: 5'- --gUGGCuuuGaCGCCCGAGCCCacaCACCAa -3' miRNA: 3'- uuuGCCGu--C-GUGGGUUUGGGc--GUGGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 280308 | 0.67 | 0.920749 |
Target: 5'- gGAGCGGUAGCggAUCCAcgaucACCgGCAUCAc -3' miRNA: 3'- -UUUGCCGUCG--UGGGUu----UGGgCGUGGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 310931 | 0.66 | 0.960211 |
Target: 5'- aGAACGGCGGUugCgGcgcGCCaCGCACg- -3' miRNA: 3'- -UUUGCCGUCGugGgUu--UGG-GCGUGgu -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 241425 | 0.72 | 0.71702 |
Target: 5'- uGGACGGCAG-ACCCAAcuuucgcGCgUGCACCGu -3' miRNA: 3'- -UUUGCCGUCgUGGGUU-------UGgGCGUGGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 164286 | 0.7 | 0.782603 |
Target: 5'- --gUGGCGGCAUCgGcACCgGCACCGg -3' miRNA: 3'- uuuGCCGUCGUGGgUuUGGgCGUGGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 32033 | 0.69 | 0.863035 |
Target: 5'- uGACGGCGcuccgcaagugucGCACCUGAAagcgaCCGCGCCc -3' miRNA: 3'- uUUGCCGU-------------CGUGGGUUUg----GGCGUGGu -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 181549 | 0.68 | 0.884637 |
Target: 5'- cAugGGCuGCugCCuuGAUgCGCGCCAu -3' miRNA: 3'- uUugCCGuCGugGGu-UUGgGCGUGGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 6350 | 0.68 | 0.903661 |
Target: 5'- gGGACGaccaGCGGCGCUCAGACC-GCugCGa -3' miRNA: 3'- -UUUGC----CGUCGUGGGUUUGGgCGugGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 18257 | 0.67 | 0.909575 |
Target: 5'- uGGCGGCAGCuucugguCCCAcACUCaCGCCGc -3' miRNA: 3'- uUUGCCGUCGu------GGGUuUGGGcGUGGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 283196 | 0.68 | 0.903661 |
Target: 5'- gGGGCGGCAGCA-CCAGGCgCgGCggggGCCGu -3' miRNA: 3'- -UUUGCCGUCGUgGGUUUG-GgCG----UGGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 5526 | 0.68 | 0.903661 |
Target: 5'- gGGACGaccaGCGGCGCUCAGACC-GCugCGa -3' miRNA: 3'- -UUUGC----CGUCGUGGGUUUGGgCGugGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 117582 | 0.77 | 0.441948 |
Target: 5'- cGAUGGCGaCGCCUAcACCCGCGCCGg -3' miRNA: 3'- uUUGCCGUcGUGGGUuUGGGCGUGGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 282082 | 0.67 | 0.908994 |
Target: 5'- cAGCGGCGGCucgggucccuUCCAAACCUGCguuuuguACCGc -3' miRNA: 3'- uUUGCCGUCGu---------GGGUUUGGGCG-------UGGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 283169 | 0.72 | 0.698777 |
Target: 5'- --uCGGCAGCAUCCGAAgCgGCAgCAa -3' miRNA: 3'- uuuGCCGUCGUGGGUUUgGgCGUgGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 281760 | 0.68 | 0.897532 |
Target: 5'- gAggUGGCAGCGCaagCCGcuCCCGUugCGc -3' miRNA: 3'- -UuuGCCGUCGUG---GGUuuGGGCGugGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 84744 | 0.67 | 0.909575 |
Target: 5'- aAAACGaCGGCACCCAcgaccACCUGUACUu -3' miRNA: 3'- -UUUGCcGUCGUGGGUu----UGGGCGUGGu -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 142255 | 0.67 | 0.920211 |
Target: 5'- cGGCGGCAGUagacaacACCCcucuACCCGCAaCGa -3' miRNA: 3'- uUUGCCGUCG-------UGGGuu--UGGGCGUgGU- -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 284304 | 0.72 | 0.698777 |
Target: 5'- --cCGGCAGCACCaGGGgCUGCGCCu -3' miRNA: 3'- uuuGCCGUCGUGGgUUUgGGCGUGGu -5' |
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10313 | 3' | -57.1 | NC_002687.1 | + | 309567 | 0.69 | 0.833262 |
Target: 5'- --uCGGCGGUGCC---GCCCGCGCUg -3' miRNA: 3'- uuuGCCGUCGUGGguuUGGGCGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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