miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10313 5' -58.7 NC_002687.1 + 96349 0.66 0.949329
Target:  5'- uGGauCGGuUCGaGGUUgCUCGCGUGCUUGGu -3'
miRNA:   3'- -CC--GCC-GGCgUCAA-GAGCGCACGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 175074 0.66 0.945326
Target:  5'- cGGCGGuuGCAGUagUUccggcgguuccgGCG-GUUCGAg -3'
miRNA:   3'- -CCGCCggCGUCAagAG------------CGCaCGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 35409 0.66 0.945326
Target:  5'- aGGagGGCCGCAGgggUCGCG-GUuaUCGAg -3'
miRNA:   3'- -CCg-CCGGCGUCaagAGCGCaCG--AGCU- -5'
10313 5' -58.7 NC_002687.1 + 200940 0.66 0.945326
Target:  5'- gGGCGGCUuggcaCAGUggCUCauGCGcGCUCGGg -3'
miRNA:   3'- -CCGCCGGc----GUCAa-GAG--CGCaCGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 292649 0.66 0.942403
Target:  5'- aGCGGCCGCGGcguucguUUgauguaccacauucgCUCGCG-GCUgGAg -3'
miRNA:   3'- cCGCCGGCGUC-------AA---------------GAGCGCaCGAgCU- -5'
10313 5' -58.7 NC_002687.1 + 45135 0.66 0.94112
Target:  5'- uGGCGaGCuCGUGGUcaagUCggGUGUGCUUGAg -3'
miRNA:   3'- -CCGC-CG-GCGUCA----AGagCGCACGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 115537 0.66 0.94112
Target:  5'- cGGUGGCauCGgAGcUCUgGCGUGCguugCGGa -3'
miRNA:   3'- -CCGCCG--GCgUCaAGAgCGCACGa---GCU- -5'
10313 5' -58.7 NC_002687.1 + 213330 0.66 0.94112
Target:  5'- cGGUGGUcaaauccuCGCGGUaCUCGCcGUcuuugaGCUCGAu -3'
miRNA:   3'- -CCGCCG--------GCGUCAaGAGCG-CA------CGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 256139 0.66 0.932097
Target:  5'- aGCGGCCGCGauGUUUUCGCucaucUUCGAu -3'
miRNA:   3'- cCGCCGGCGU--CAAGAGCGcac--GAGCU- -5'
10313 5' -58.7 NC_002687.1 + 201854 0.66 0.932097
Target:  5'- cGGCGGCUuggcaCAGUggCUcaCGCGcGCUCGGg -3'
miRNA:   3'- -CCGCCGGc----GUCAa-GA--GCGCaCGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 234196 0.67 0.91702
Target:  5'- aGUGGCCGCuGaUCggaagcaaCGCGaGCUCGAc -3'
miRNA:   3'- cCGCCGGCGuCaAGa-------GCGCaCGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 175508 0.67 0.91702
Target:  5'- aGCGGUCGUuccgAGUaUCUUGUaUGCUCGGa -3'
miRNA:   3'- cCGCCGGCG----UCA-AGAGCGcACGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 159345 0.67 0.911583
Target:  5'- aGGUGcaGCUGCAGg---CGCuGUGCUCGGc -3'
miRNA:   3'- -CCGC--CGGCGUCaagaGCG-CACGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 127047 0.67 0.905942
Target:  5'- gGGCgccaucaagGGCgCGCuuGGUUCUCGCGgugcaccgacUGUUCGAa -3'
miRNA:   3'- -CCG---------CCG-GCG--UCAAGAGCGC----------ACGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 71951 0.67 0.9001
Target:  5'- cGCcGCCGgAGaUUCUCuCGUGCUUGAc -3'
miRNA:   3'- cCGcCGGCgUC-AAGAGcGCACGAGCU- -5'
10313 5' -58.7 NC_002687.1 + 97308 0.67 0.898308
Target:  5'- gGGCGGUCGaacuGuUUCUCGCuuguaaugggaacaGUGCUCGc -3'
miRNA:   3'- -CCGCCGGCgu--C-AAGAGCG--------------CACGAGCu -5'
10313 5' -58.7 NC_002687.1 + 223606 0.67 0.894057
Target:  5'- uGGUGGCCGCAacacaccacGUUCUUcUGUGCcagcguUCGAc -3'
miRNA:   3'- -CCGCCGGCGU---------CAAGAGcGCACG------AGCU- -5'
10313 5' -58.7 NC_002687.1 + 40226 0.68 0.887816
Target:  5'- uGGUGGCCuuucuGUAGUguUCUUGUGUGCgugCGu -3'
miRNA:   3'- -CCGCCGG-----CGUCA--AGAGCGCACGa--GCu -5'
10313 5' -58.7 NC_002687.1 + 297324 0.68 0.881381
Target:  5'- cGGCGGacugcuUGCGGaaCUCGCGUGCggCGc -3'
miRNA:   3'- -CCGCCg-----GCGUCaaGAGCGCACGa-GCu -5'
10313 5' -58.7 NC_002687.1 + 262022 0.68 0.874756
Target:  5'- aGCGuCCGCcGUUCgUCGCGUaCUCGAc -3'
miRNA:   3'- cCGCcGGCGuCAAG-AGCGCAcGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.