miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10314 3' -55 NC_002687.1 + 78276 1.11 0.006421
Target:  5'- uCUCGCCGAUGCCAGCUUCCCAUUCGCc -3'
miRNA:   3'- -GAGCGGCUACGGUCGAAGGGUAAGCG- -5'
10314 3' -55 NC_002687.1 + 213947 0.81 0.390515
Target:  5'- cCUUGCUGAUGuCCAGCUUCUCGaUCGUg -3'
miRNA:   3'- -GAGCGGCUAC-GGUCGAAGGGUaAGCG- -5'
10314 3' -55 NC_002687.1 + 293007 0.72 0.853574
Target:  5'- gCUCuGCCGAugacacUGCCGGCcgaUCCCGccguuuuUUCGCa -3'
miRNA:   3'- -GAG-CGGCU------ACGGUCGa--AGGGU-------AAGCG- -5'
10314 3' -55 NC_002687.1 + 323866 0.71 0.875894
Target:  5'- cCUUGCCGAaagagagaUGCCGGCgcgucgUCCCAgaucaCGUg -3'
miRNA:   3'- -GAGCGGCU--------ACGGUCGa-----AGGGUaa---GCG- -5'
10314 3' -55 NC_002687.1 + 212675 0.7 0.924394
Target:  5'- -aCGCCGAggaUGCCAGCgagCCggaGUUCGa -3'
miRNA:   3'- gaGCGGCU---ACGGUCGaa-GGg--UAAGCg -5'
10314 3' -55 NC_002687.1 + 262563 0.7 0.924394
Target:  5'- uCUCGCCG-UGCUucccguGCUUCUC--UCGCa -3'
miRNA:   3'- -GAGCGGCuACGGu-----CGAAGGGuaAGCG- -5'
10314 3' -55 NC_002687.1 + 57480 0.69 0.934357
Target:  5'- -cCGCCGAUG-CAGCaUCCCGUUg-- -3'
miRNA:   3'- gaGCGGCUACgGUCGaAGGGUAAgcg -5'
10314 3' -55 NC_002687.1 + 34014 0.69 0.943446
Target:  5'- uUUGCCGuaccccguGUGCCAGCUgucucUUCCGcgCGCg -3'
miRNA:   3'- gAGCGGC--------UACGGUCGA-----AGGGUaaGCG- -5'
10314 3' -55 NC_002687.1 + 292435 0.69 0.943446
Target:  5'- -gCGCCGcgGCCGccaccGCUUCCaGUUgGCg -3'
miRNA:   3'- gaGCGGCuaCGGU-----CGAAGGgUAAgCG- -5'
10314 3' -55 NC_002687.1 + 135743 0.69 0.947666
Target:  5'- uCUCGUCGAauUGUgGuGUUUCCCuuUUCGCa -3'
miRNA:   3'- -GAGCGGCU--ACGgU-CGAAGGGu-AAGCG- -5'
10314 3' -55 NC_002687.1 + 328787 0.68 0.955468
Target:  5'- --aGCUGGUGCCAGCaugCCuCGUagCGCu -3'
miRNA:   3'- gagCGGCUACGGUCGaa-GG-GUAa-GCG- -5'
10314 3' -55 NC_002687.1 + 90600 0.68 0.955468
Target:  5'- -aCGUcaCGAUGCCAGaCUUCUCGUcCGUu -3'
miRNA:   3'- gaGCG--GCUACGGUC-GAAGGGUAaGCG- -5'
10314 3' -55 NC_002687.1 + 307384 0.68 0.955836
Target:  5'- cCUCGCCGAUgGCCAugGCcUCCaCAgauccguccaauccgUCGCu -3'
miRNA:   3'- -GAGCGGCUA-CGGU--CGaAGG-GUa--------------AGCG- -5'
10314 3' -55 NC_002687.1 + 101142 0.68 0.956927
Target:  5'- gUCGCCGAuUGCCAgGCccuccgUUCCCAgagagauaucuggCGCg -3'
miRNA:   3'- gAGCGGCU-ACGGU-CG------AAGGGUaa-----------GCG- -5'
10314 3' -55 NC_002687.1 + 74082 0.68 0.959055
Target:  5'- gUCGCCGAccGUCAuGUcUCCCAgaCGCg -3'
miRNA:   3'- gAGCGGCUa-CGGU-CGaAGGGUaaGCG- -5'
10314 3' -55 NC_002687.1 + 200107 0.68 0.96244
Target:  5'- gCUCGuuGGUGCCGGCgacgacggCCGcgCGCc -3'
miRNA:   3'- -GAGCggCUACGGUCGaag-----GGUaaGCG- -5'
10314 3' -55 NC_002687.1 + 254086 0.68 0.965624
Target:  5'- aUCGCCcc-GCUGGCUUCUCGgugCGCc -3'
miRNA:   3'- gAGCGGcuaCGGUCGAAGGGUaa-GCG- -5'
10314 3' -55 NC_002687.1 + 253288 0.68 0.971414
Target:  5'- gUCGgacauaCCGcUGCCAGCccgacaaauguUUCUCAUUCGCc -3'
miRNA:   3'- gAGC------GGCuACGGUCG-----------AAGGGUAAGCG- -5'
10314 3' -55 NC_002687.1 + 325181 0.67 0.97403
Target:  5'- gCUCGuuGAUGCaguGGCgugCCCG-UCGUu -3'
miRNA:   3'- -GAGCggCUACGg--UCGaa-GGGUaAGCG- -5'
10314 3' -55 NC_002687.1 + 324797 0.67 0.97403
Target:  5'- gCUCGuuGAUGCaguGGCgugCCCG-UCGUu -3'
miRNA:   3'- -GAGCggCUACGg--UCGaa-GGGUaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.