miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10314 3' -55 NC_002687.1 + 21814 0.67 0.978732
Target:  5'- gUCGCCGggGCUGGCUcgUCAUgcuUCGUg -3'
miRNA:   3'- gAGCGGCuaCGGUCGAagGGUA---AGCG- -5'
10314 3' -55 NC_002687.1 + 34014 0.69 0.943446
Target:  5'- uUUGCCGuaccccguGUGCCAGCUgucucUUCCGcgCGCg -3'
miRNA:   3'- gAGCGGC--------UACGGUCGA-----AGGGUaaGCG- -5'
10314 3' -55 NC_002687.1 + 39438 0.66 0.984562
Target:  5'- uUUGUCGAUGUCGGCg--CCAUgcuucagcagcUCGCg -3'
miRNA:   3'- gAGCGGCUACGGUCGaagGGUA-----------AGCG- -5'
10314 3' -55 NC_002687.1 + 57480 0.69 0.934357
Target:  5'- -cCGCCGAUG-CAGCaUCCCGUUg-- -3'
miRNA:   3'- gaGCGGCUACgGUCGaAGGGUAAgcg -5'
10314 3' -55 NC_002687.1 + 74082 0.68 0.959055
Target:  5'- gUCGCCGAccGUCAuGUcUCCCAgaCGCg -3'
miRNA:   3'- gAGCGGCUa-CGGU-CGaAGGGUaaGCG- -5'
10314 3' -55 NC_002687.1 + 78276 1.11 0.006421
Target:  5'- uCUCGCCGAUGCCAGCUUCCCAUUCGCc -3'
miRNA:   3'- -GAGCGGCUACGGUCGAAGGGUAAGCG- -5'
10314 3' -55 NC_002687.1 + 89785 0.67 0.982773
Target:  5'- uUCaUCGGUGUCuGCUUCUUGUUCGUa -3'
miRNA:   3'- gAGcGGCUACGGuCGAAGGGUAAGCG- -5'
10314 3' -55 NC_002687.1 + 90600 0.68 0.955468
Target:  5'- -aCGUcaCGAUGCCAGaCUUCUCGUcCGUu -3'
miRNA:   3'- gaGCG--GCUACGGUC-GAAGGGUAaGCG- -5'
10314 3' -55 NC_002687.1 + 95993 0.65 0.991478
Target:  5'- cCUUGCUcAUGCCGGCggCUUGUUUGUu -3'
miRNA:   3'- -GAGCGGcUACGGUCGaaGGGUAAGCG- -5'
10314 3' -55 NC_002687.1 + 100989 0.66 0.986206
Target:  5'- -aUGCCGAUGUUGGaUUUCCaCAUgUCGCc -3'
miRNA:   3'- gaGCGGCUACGGUC-GAAGG-GUA-AGCG- -5'
10314 3' -55 NC_002687.1 + 101142 0.68 0.956927
Target:  5'- gUCGCCGAuUGCCAgGCccuccgUUCCCAgagagauaucuggCGCg -3'
miRNA:   3'- gAGCGGCU-ACGGU-CG------AAGGGUaa-----------GCG- -5'
10314 3' -55 NC_002687.1 + 104753 0.65 0.99137
Target:  5'- -aCGCCGugucgaaAUGCC-GCUUCCgGUgauccaccgacuUCGCa -3'
miRNA:   3'- gaGCGGC-------UACGGuCGAAGGgUA------------AGCG- -5'
10314 3' -55 NC_002687.1 + 109780 0.66 0.984562
Target:  5'- aUUGCgGAUGCCAcGCUU-CUGUUgGCg -3'
miRNA:   3'- gAGCGgCUACGGU-CGAAgGGUAAgCG- -5'
10314 3' -55 NC_002687.1 + 135743 0.69 0.947666
Target:  5'- uCUCGUCGAauUGUgGuGUUUCCCuuUUCGCa -3'
miRNA:   3'- -GAGCGGCU--ACGgU-CGAAGGGu-AAGCG- -5'
10314 3' -55 NC_002687.1 + 146468 0.66 0.990221
Target:  5'- aCUUGCCGAUGCCAcagaaucgguuacGuCUcCCCAcaUGCu -3'
miRNA:   3'- -GAGCGGCUACGGU-------------C-GAaGGGUaaGCG- -5'
10314 3' -55 NC_002687.1 + 164648 0.66 0.990341
Target:  5'- -aUGCCGGUGCCGGUg-CCgAUgcCGCc -3'
miRNA:   3'- gaGCGGCUACGGUCGaaGGgUAa-GCG- -5'
10314 3' -55 NC_002687.1 + 181625 0.66 0.984562
Target:  5'- uUUGCCGGcuuuuUGCCGGCUUUgCuggcUUUGCu -3'
miRNA:   3'- gAGCGGCU-----ACGGUCGAAGgGu---AAGCG- -5'
10314 3' -55 NC_002687.1 + 200107 0.68 0.96244
Target:  5'- gCUCGuuGGUGCCGGCgacgacggCCGcgCGCc -3'
miRNA:   3'- -GAGCggCUACGGUCGaag-----GGUaaGCG- -5'
10314 3' -55 NC_002687.1 + 200424 0.65 0.991478
Target:  5'- gUC-CCGAUGCCGuGCgcgCCCucgUGCg -3'
miRNA:   3'- gAGcGGCUACGGU-CGaa-GGGuaaGCG- -5'
10314 3' -55 NC_002687.1 + 208585 0.66 0.984562
Target:  5'- gUCGUCGcUGCU-GCUUCCaucgUCGCu -3'
miRNA:   3'- gAGCGGCuACGGuCGAAGGgua-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.