miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10314 3' -55 NC_002687.1 + 293007 0.72 0.853574
Target:  5'- gCUCuGCCGAugacacUGCCGGCcgaUCCCGccguuuuUUCGCa -3'
miRNA:   3'- -GAG-CGGCU------ACGGUCGa--AGGGU-------AAGCG- -5'
10314 3' -55 NC_002687.1 + 291303 0.67 0.982773
Target:  5'- cCUCGCgCGGUGcCCAGCggCCgCGaggcugUCGUa -3'
miRNA:   3'- -GAGCG-GCUAC-GGUCGaaGG-GUa-----AGCG- -5'
10314 3' -55 NC_002687.1 + 237746 0.67 0.980832
Target:  5'- -aCGCCGAgaucagaggaaUGCCAGCga-CCAUg-GCg -3'
miRNA:   3'- gaGCGGCU-----------ACGGUCGaagGGUAagCG- -5'
10314 3' -55 NC_002687.1 + 21814 0.67 0.978732
Target:  5'- gUCGCCGggGCUGGCUcgUCAUgcuUCGUg -3'
miRNA:   3'- gAGCGGCuaCGGUCGAagGGUA---AGCG- -5'
10314 3' -55 NC_002687.1 + 254086 0.68 0.965624
Target:  5'- aUCGCCcc-GCUGGCUUCUCGgugCGCc -3'
miRNA:   3'- gAGCGGcuaCGGUCGAAGGGUaa-GCG- -5'
10314 3' -55 NC_002687.1 + 200107 0.68 0.96244
Target:  5'- gCUCGuuGGUGCCGGCgacgacggCCGcgCGCc -3'
miRNA:   3'- -GAGCggCUACGGUCGaag-----GGUaaGCG- -5'
10314 3' -55 NC_002687.1 + 200424 0.65 0.991478
Target:  5'- gUC-CCGAUGCCGuGCgcgCCCucgUGCg -3'
miRNA:   3'- gAGcGGCUACGGU-CGaa-GGGuaaGCG- -5'
10314 3' -55 NC_002687.1 + 330857 0.65 0.991478
Target:  5'- -aCGCUGAcGCCacAGCaggCCCGcUCGCu -3'
miRNA:   3'- gaGCGGCUaCGG--UCGaa-GGGUaAGCG- -5'
10314 3' -55 NC_002687.1 + 332250 0.66 0.986206
Target:  5'- uCUUGUCGcu-CCAGCcgCCCAUUCGa -3'
miRNA:   3'- -GAGCGGCuacGGUCGaaGGGUAAGCg -5'
10314 3' -55 NC_002687.1 + 89785 0.67 0.982773
Target:  5'- uUCaUCGGUGUCuGCUUCUUGUUCGUa -3'
miRNA:   3'- gAGcGGCUACGGuCGAAGGGUAAGCG- -5'
10314 3' -55 NC_002687.1 + 226791 0.67 0.976467
Target:  5'- -gUGCCGGUGCCGGUgccggUgCCggUgGCg -3'
miRNA:   3'- gaGCGGCUACGGUCGa----AgGGuaAgCG- -5'
10314 3' -55 NC_002687.1 + 292435 0.69 0.943446
Target:  5'- -gCGCCGcgGCCGccaccGCUUCCaGUUgGCg -3'
miRNA:   3'- gaGCGGCuaCGGU-----CGAAGGgUAAgCG- -5'
10314 3' -55 NC_002687.1 + 332995 0.66 0.989088
Target:  5'- uUgGCCcuGAUcGCgAGCUUCCUGUUgCGCa -3'
miRNA:   3'- gAgCGG--CUA-CGgUCGAAGGGUAA-GCG- -5'
10314 3' -55 NC_002687.1 + 328787 0.68 0.955468
Target:  5'- --aGCUGGUGCCAGCaugCCuCGUagCGCu -3'
miRNA:   3'- gagCGGCUACGGUCGaa-GG-GUAa-GCG- -5'
10314 3' -55 NC_002687.1 + 237576 0.67 0.982773
Target:  5'- uUCGCUuAUGagaCGGCUUCCCGagacugCGCu -3'
miRNA:   3'- gAGCGGcUACg--GUCGAAGGGUaa----GCG- -5'
10314 3' -55 NC_002687.1 + 95993 0.65 0.991478
Target:  5'- cCUUGCUcAUGCCGGCggCUUGUUUGUu -3'
miRNA:   3'- -GAGCGGcUACGGUCGaaGGGUAAGCG- -5'
10314 3' -55 NC_002687.1 + 307384 0.68 0.955836
Target:  5'- cCUCGCCGAUgGCCAugGCcUCCaCAgauccguccaauccgUCGCu -3'
miRNA:   3'- -GAGCGGCUA-CGGU--CGaAGG-GUa--------------AGCG- -5'
10314 3' -55 NC_002687.1 + 181625 0.66 0.984562
Target:  5'- uUUGCCGGcuuuuUGCCGGCUUUgCuggcUUUGCu -3'
miRNA:   3'- gAGCGGCU-----ACGGUCGAAGgGu---AAGCG- -5'
10314 3' -55 NC_002687.1 + 325181 0.67 0.97403
Target:  5'- gCUCGuuGAUGCaguGGCgugCCCG-UCGUu -3'
miRNA:   3'- -GAGCggCUACGg--UCGaa-GGGUaAGCG- -5'
10314 3' -55 NC_002687.1 + 324797 0.67 0.97403
Target:  5'- gCUCGuuGAUGCaguGGCgugCCCG-UCGUu -3'
miRNA:   3'- -GAGCggCUACGg--UCGaa-GGGUaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.