miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 3' -56.1 NC_002687.1 + 211164 0.71 0.846672
Target:  5'- -gACCACC-AGGUCUUccucggggGuCGUCACCGUg -3'
miRNA:   3'- agUGGUGGuUCCAGAA--------C-GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 244070 0.71 0.851948
Target:  5'- aUCGCCACCucuaggcacugugcGAGGUCggugGUGCCGCgagGCu -3'
miRNA:   3'- -AGUGGUGG--------------UUCCAGaa--CGCGGUGg--CG- -5'
10315 3' -56.1 NC_002687.1 + 200799 0.7 0.861511
Target:  5'- gUCugCACCGAGG-CgcacgaggGCGCgCACgGCa -3'
miRNA:   3'- -AGugGUGGUUCCaGaa------CGCG-GUGgCG- -5'
10315 3' -56.1 NC_002687.1 + 307855 0.7 0.868653
Target:  5'- -gACCACC-AGGcCUggugggGCGaCUACCGCg -3'
miRNA:   3'- agUGGUGGuUCCaGAa-----CGC-GGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 34344 0.7 0.868653
Target:  5'- cUUACgACCAgacaaAGGUUga-CGCCGCCGCu -3'
miRNA:   3'- -AGUGgUGGU-----UCCAGaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 214908 0.7 0.868653
Target:  5'- --gUgGCCAAGGUC---CGCCGCCGCc -3'
miRNA:   3'- aguGgUGGUUCCAGaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 306720 0.7 0.882357
Target:  5'- gUACCGCCgGAGGUCUUGUucaaguGUCACCc- -3'
miRNA:   3'- aGUGGUGG-UUCCAGAACG------CGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 224540 0.7 0.89526
Target:  5'- cCACCGCCAccAGcaCUgccccCGCCACCGCc -3'
miRNA:   3'- aGUGGUGGU--UCcaGAac---GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 209286 0.69 0.90675
Target:  5'- -gACCACCcGGGugguuuuUCUuacacUGUGUCGCCGCg -3'
miRNA:   3'- agUGGUGGuUCC-------AGA-----ACGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 208943 0.69 0.907334
Target:  5'- gCACCACCGucGUCgu-CGCUGCUGCu -3'
miRNA:   3'- aGUGGUGGUucCAGaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 19081 0.69 0.913053
Target:  5'- ---aCGCCAGGGUCUUGCuUCGCC-Ca -3'
miRNA:   3'- agugGUGGUUCCAGAACGcGGUGGcG- -5'
10315 3' -56.1 NC_002687.1 + 315818 0.69 0.913053
Target:  5'- cCGCCGCgCcGGGUgc--CGCCGCCGCa -3'
miRNA:   3'- aGUGGUG-GuUCCAgaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 154633 0.69 0.918559
Target:  5'- cCGCuCACCAGGccGUUgUGUcgGCCACCGCc -3'
miRNA:   3'- aGUG-GUGGUUC--CAGaACG--CGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 295218 0.69 0.918559
Target:  5'- cCGCUACCGucucgGGGUCguggGCGUacucgaugcauCGCCGCa -3'
miRNA:   3'- aGUGGUGGU-----UCCAGaa--CGCG-----------GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 84121 0.69 0.920701
Target:  5'- gCACCGCUucGAGGUCUcgggaacaucucucuUGacgggugaUGCCACCGUg -3'
miRNA:   3'- aGUGGUGG--UUCCAGA---------------AC--------GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 89713 0.69 0.92385
Target:  5'- gUCuCCGCCGAGGUCg-GUGUCGUCGUa -3'
miRNA:   3'- -AGuGGUGGUUCCAGaaCGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 226865 0.69 0.92385
Target:  5'- gCGCCAUCA--GUCccagcgGCGCCACCGa -3'
miRNA:   3'- aGUGGUGGUucCAGaa----CGCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 32593 0.68 0.928924
Target:  5'- aUACCuAUCGAguGGUCccGUGCCAUCGCg -3'
miRNA:   3'- aGUGG-UGGUU--CCAGaaCGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 77708 0.68 0.937973
Target:  5'- -gGCCGCCGcgaaugauggugcGGGUUUggGUGCUGCCGUu -3'
miRNA:   3'- agUGGUGGU-------------UCCAGAa-CGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 282530 0.68 0.941988
Target:  5'- cCGCCGCCGcAGGcCcuacucccgccGCuGCCGCCGCa -3'
miRNA:   3'- aGUGGUGGU-UCCaGaa---------CG-CGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.