miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10316 3' -47.5 NC_002687.1 + 215196 0.66 0.999998
Target:  5'- aCUCGUgcGUCACuuccGCguccuccGCGCcGGAAGCg -3'
miRNA:   3'- -GAGUA--CAGUGua--CGa------UGCGuUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 89226 0.66 0.999998
Target:  5'- cCUCAUGUCccuuuuCGUGCUugauuucugggACaGCuAGggGCu -3'
miRNA:   3'- -GAGUACAGu-----GUACGA-----------UG-CGuUCuuCG- -5'
10316 3' -47.5 NC_002687.1 + 113465 0.66 0.999997
Target:  5'- -gCGUGUCAaaaaCUugGCGAGAcGCg -3'
miRNA:   3'- gaGUACAGUguacGAugCGUUCUuCG- -5'
10316 3' -47.5 NC_002687.1 + 6261 0.66 0.999997
Target:  5'- aUCAUG-CGCAaGUUGUGCAcggggGGAAGCa -3'
miRNA:   3'- gAGUACaGUGUaCGAUGCGU-----UCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 124337 0.66 0.999997
Target:  5'- gUCAUagcGUCACAacgaauUGCUGCGCcGGAuaccaGGUg -3'
miRNA:   3'- gAGUA---CAGUGU------ACGAUGCGuUCU-----UCG- -5'
10316 3' -47.5 NC_002687.1 + 247845 0.66 0.999997
Target:  5'- gUUAUGUCACGggcgugGCUGaagaauUGCcAGGAGCc -3'
miRNA:   3'- gAGUACAGUGUa-----CGAU------GCGuUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 161867 0.66 0.999997
Target:  5'- gUCAcGUCGCGcaGCaACGCGcucugAGAAGCg -3'
miRNA:   3'- gAGUaCAGUGUa-CGaUGCGU-----UCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 5437 0.66 0.999997
Target:  5'- aUCAUG-CGCAaGUUGUGCAcggggGGAAGCa -3'
miRNA:   3'- gAGUACaGUGUaCGAUGCGU-----UCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 248629 0.66 0.999996
Target:  5'- aUCGUGgaacgaauucagCACAUGUUgAUGCGAGuGGCu -3'
miRNA:   3'- gAGUACa-----------GUGUACGA-UGCGUUCuUCG- -5'
10316 3' -47.5 NC_002687.1 + 58710 0.66 0.999995
Target:  5'- -gCAUGUCAUgcaGCUcACGCcugcacuGAGGAGCa -3'
miRNA:   3'- gaGUACAGUGua-CGA-UGCG-------UUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 136716 0.66 0.999993
Target:  5'- gUCGUG-CGCAUGacaacauccaUUGCGUuGGAGGCg -3'
miRNA:   3'- gAGUACaGUGUAC----------GAUGCGuUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 243674 0.66 0.999993
Target:  5'- aCUCG-GUCGaagcggGUGCaGCgGCAGGAAGCu -3'
miRNA:   3'- -GAGUaCAGUg-----UACGaUG-CGUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 11877 0.66 0.999993
Target:  5'- gCUCGUGUCGCA-GCUGCuauAGccGCc -3'
miRNA:   3'- -GAGUACAGUGUaCGAUGcguUCuuCG- -5'
10316 3' -47.5 NC_002687.1 + 119443 0.66 0.999993
Target:  5'- ----cGUCACc-GUUGCGguGGAGGCg -3'
miRNA:   3'- gaguaCAGUGuaCGAUGCguUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 76342 0.67 0.999987
Target:  5'- -gCGUGUCAaGUGCacugACuGCAAGAAGg -3'
miRNA:   3'- gaGUACAGUgUACGa---UG-CGUUCUUCg -5'
10316 3' -47.5 NC_002687.1 + 87222 0.67 0.999982
Target:  5'- -cCGUGUUGCucgcUGgUGCGgGGGAGGCg -3'
miRNA:   3'- gaGUACAGUGu---ACgAUGCgUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 82641 0.67 0.999982
Target:  5'- gUCAcuUCGCAUGUucugUACGUcAGAGGCc -3'
miRNA:   3'- gAGUacAGUGUACG----AUGCGuUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 257777 0.67 0.999976
Target:  5'- uCUCGuUGUCAa--GCUGCGgagcuggcCGAGAGGCa -3'
miRNA:   3'- -GAGU-ACAGUguaCGAUGC--------GUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 55507 0.68 0.999968
Target:  5'- -aCAUGaaaGCAUGCUACaauauuuaCGAGGAGCa -3'
miRNA:   3'- gaGUACag-UGUACGAUGc-------GUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 79647 0.68 0.999968
Target:  5'- uCUgAUGUCGCG-GUgGCGCAAGAccuuGGUg -3'
miRNA:   3'- -GAgUACAGUGUaCGaUGCGUUCU----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.