miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10317 3' -55.7 NC_002687.1 + 223460 0.66 0.988999
Target:  5'- gGgUGACGGUGgugcuggcggAGGUUCgGgauGCGGUGg -3'
miRNA:   3'- gUgGCUGCCACa---------UCCAAGgC---UGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 200240 0.66 0.98764
Target:  5'- aCACCGACGaacugGGGUcucgacCCGACGGUu -3'
miRNA:   3'- -GUGGCUGCcaca-UCCAa-----GGCUGCCAc -5'
10317 3' -55.7 NC_002687.1 + 101025 0.66 0.984536
Target:  5'- uCGCCGACGGUGaAGGcggCac-CGGUGu -3'
miRNA:   3'- -GUGGCUGCCACaUCCaa-GgcuGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 264004 0.66 0.982778
Target:  5'- aGCCc-CGGUGUAGGaggaCUGACGGUc -3'
miRNA:   3'- gUGGcuGCCACAUCCaa--GGCUGCCAc -5'
10317 3' -55.7 NC_002687.1 + 308367 0.66 0.982778
Target:  5'- gACgGGCGGUGUAaag-CCGACGcGUGc -3'
miRNA:   3'- gUGgCUGCCACAUccaaGGCUGC-CAC- -5'
10317 3' -55.7 NC_002687.1 + 131020 0.67 0.980873
Target:  5'- uGCCGAugacaCGGUGUgcugcaagaagaAGGUUCUGACGa-- -3'
miRNA:   3'- gUGGCU-----GCCACA------------UCCAAGGCUGCcac -5'
10317 3' -55.7 NC_002687.1 + 97485 0.67 0.976596
Target:  5'- uCGCUGACGGUcggGUuaGGGUcUUGugGGUGa -3'
miRNA:   3'- -GUGGCUGCCA---CA--UCCAaGGCugCCAC- -5'
10317 3' -55.7 NC_002687.1 + 85302 0.67 0.971657
Target:  5'- -cCCGugGGUcccGUGGGUcCCGuCGGUc -3'
miRNA:   3'- guGGCugCCA---CAUCCAaGGCuGCCAc -5'
10317 3' -55.7 NC_002687.1 + 226804 0.67 0.971657
Target:  5'- uGCCGGugcCGGUGgcGGUggcggUGGCGGUGg -3'
miRNA:   3'- gUGGCU---GCCACauCCAag---GCUGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 224199 0.67 0.971657
Target:  5'- gCGgUGGCGGUGgcGGUggcggUGGCGGUGg -3'
miRNA:   3'- -GUgGCUGCCACauCCAag---GCUGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 226726 0.68 0.955761
Target:  5'- aCGCgGACGcGUGUggacgcaGGGUUCucucggcagCGGCGGUGg -3'
miRNA:   3'- -GUGgCUGC-CACA-------UCCAAG---------GCUGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 307817 0.68 0.95243
Target:  5'- aCACUGAUGGggacGgcGGUgaCGGCGGUGa -3'
miRNA:   3'- -GUGGCUGCCa---CauCCAagGCUGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 304747 0.7 0.920798
Target:  5'- aCACCGAUGGauuugaacgGUGGGgUCCGAagaaugcaGGUGg -3'
miRNA:   3'- -GUGGCUGCCa--------CAUCCaAGGCUg-------CCAC- -5'
10317 3' -55.7 NC_002687.1 + 224133 0.71 0.878917
Target:  5'- gCGCUGGCGGUGgcGGUggcgCUggcgcuggcgcuGGCGGUGg -3'
miRNA:   3'- -GUGGCUGCCACauCCAa---GG------------CUGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 130727 0.71 0.85799
Target:  5'- aGCUGGCGGUGguGGUggUGGCGGUGg -3'
miRNA:   3'- gUGGCUGCCACauCCAagGCUGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 98157 0.72 0.843128
Target:  5'- uGCCGAUGGUGccGGUggugCCaGCGGUGc -3'
miRNA:   3'- gUGGCUGCCACauCCAa---GGcUGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 175076 0.74 0.732367
Target:  5'- -uCCGGCGGUugcaguaguuccGgcGGUUCCGGCGGUu -3'
miRNA:   3'- guGGCUGCCA------------CauCCAAGGCUGCCAc -5'
10317 3' -55.7 NC_002687.1 + 69048 0.75 0.713759
Target:  5'- uGgCGGCGGUGgcGGUggugUCGGCGGUGc -3'
miRNA:   3'- gUgGCUGCCACauCCAa---GGCUGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 316046 0.75 0.704358
Target:  5'- gGCUGGCGGUGgugccgauGGUgCCGAUGGUGc -3'
miRNA:   3'- gUGGCUGCCACau------CCAaGGCUGCCAC- -5'
10317 3' -55.7 NC_002687.1 + 84779 0.76 0.656696
Target:  5'- gUAUUGACGGUGgucguGGUUCCGuucACGGUGa -3'
miRNA:   3'- -GUGGCUGCCACau---CCAAGGC---UGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.