miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10318 3' -45.6 NC_002687.1 + 84560 1.1 0.057682
Target:  5'- gUGAUGUCGGACACGUUCAACAAAUCGu -3'
miRNA:   3'- -ACUACAGCCUGUGCAAGUUGUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 4348 0.75 0.996836
Target:  5'- uUGGUagcGUCGGACACGUcaUCGACGAGc-- -3'
miRNA:   3'- -ACUA---CAGCCUGUGCA--AGUUGUUUagc -5'
10318 3' -45.6 NC_002687.1 + 58042 0.74 0.998906
Target:  5'- gGGUGUCGGGCGCGUugUUGugAGAaaaucUCGg -3'
miRNA:   3'- aCUACAGCCUGUGCA--AGUugUUU-----AGC- -5'
10318 3' -45.6 NC_002687.1 + 39433 0.73 0.999264
Target:  5'- cGAUGUCGGcgcCAUGcUUCAGCAGcUCGc -3'
miRNA:   3'- aCUACAGCCu--GUGC-AAGUUGUUuAGC- -5'
10318 3' -45.6 NC_002687.1 + 200743 0.73 0.999611
Target:  5'- cUGAgGUCGGGCGCGgaCGAgaGAAUCGc -3'
miRNA:   3'- -ACUaCAGCCUGUGCaaGUUg-UUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 250124 0.73 0.999611
Target:  5'- cGGUGgCGGcaGCGUUCAAgGAAUCGa -3'
miRNA:   3'- aCUACaGCCugUGCAAGUUgUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 102849 0.72 0.999753
Target:  5'- cGAcGUCGGACGCuaGUUCGACGAc--- -3'
miRNA:   3'- aCUaCAGCCUGUG--CAAGUUGUUuagc -5'
10318 3' -45.6 NC_002687.1 + 70569 0.72 0.999848
Target:  5'- cGAUGUguuuccUGGAUAUGUUCAACcccGUCGa -3'
miRNA:   3'- aCUACA------GCCUGUGCAAGUUGuu-UAGC- -5'
10318 3' -45.6 NC_002687.1 + 257951 0.71 0.999909
Target:  5'- cUGGUGUCuGACAUGgUCGACAuGGUCa -3'
miRNA:   3'- -ACUACAGcCUGUGCaAGUUGU-UUAGc -5'
10318 3' -45.6 NC_002687.1 + 29099 0.71 0.99993
Target:  5'- cGAUGUCcGACACGUugUUGACAAuugCGg -3'
miRNA:   3'- aCUACAGcCUGUGCA--AGUUGUUua-GC- -5'
10318 3' -45.6 NC_002687.1 + 132558 0.71 0.999947
Target:  5'- -cAUGUCGGACAC-UUCAgGCAAAUUu -3'
miRNA:   3'- acUACAGCCUGUGcAAGU-UGUUUAGc -5'
10318 3' -45.6 NC_002687.1 + 279184 0.7 0.999978
Target:  5'- cGGUGcCGGAaGCGUUUgggGACAAGUUGa -3'
miRNA:   3'- aCUACaGCCUgUGCAAG---UUGUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 284378 0.7 0.999984
Target:  5'- aGAgg-CGG-CGCGUUCAGCAGgugcAUCGa -3'
miRNA:   3'- aCUacaGCCuGUGCAAGUUGUU----UAGC- -5'
10318 3' -45.6 NC_002687.1 + 263621 0.69 0.999994
Target:  5'- cUGAUGUCGGGCGuCGauauucccCGGCGAuUCGa -3'
miRNA:   3'- -ACUACAGCCUGU-GCaa------GUUGUUuAGC- -5'
10318 3' -45.6 NC_002687.1 + 240556 0.69 0.999997
Target:  5'- -aAUGUaaGACAUGUUCGGCcGAUCGc -3'
miRNA:   3'- acUACAgcCUGUGCAAGUUGuUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 100848 0.69 0.999998
Target:  5'- cUGAcggGUCGGAUGucgauucaaccguCGUucUCGACAAGUCGg -3'
miRNA:   3'- -ACUa--CAGCCUGU-------------GCA--AGUUGUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 158157 0.68 0.999999
Target:  5'- cUGGUGUUGGcguucuuCGCGUcgcUCGACcAGAUCGu -3'
miRNA:   3'- -ACUACAGCCu------GUGCA---AGUUG-UUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 133417 0.68 0.999999
Target:  5'- cGAgagUGGACAC-UUCGACGAGUUGu -3'
miRNA:   3'- aCUacaGCCUGUGcAAGUUGUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 226968 0.68 0.999999
Target:  5'- gUGGUGUCGGugGCuccgaAACuGAAUCGg -3'
miRNA:   3'- -ACUACAGCCugUGcaag-UUG-UUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 118752 0.66 1
Target:  5'- cGAcG-CGGAacCACGUUCGACGAccaGUCu -3'
miRNA:   3'- aCUaCaGCCU--GUGCAAGUUGUU---UAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.