Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10318 | 3' | -45.6 | NC_002687.1 | + | 200743 | 0.73 | 0.999611 |
Target: 5'- cUGAgGUCGGGCGCGgaCGAgaGAAUCGc -3' miRNA: 3'- -ACUaCAGCCUGUGCaaGUUg-UUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 256539 | 0.67 | 1 |
Target: 5'- -uGUGgaagUGGugACGUUCGGCGcucccaaGAUCGg -3' miRNA: 3'- acUACa---GCCugUGCAAGUUGU-------UUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 81929 | 0.66 | 1 |
Target: 5'- aGAUG-CaGGACugGUUCAAuCGAAaCGu -3' miRNA: 3'- aCUACaG-CCUGugCAAGUU-GUUUaGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 118752 | 0.66 | 1 |
Target: 5'- cGAcG-CGGAacCACGUUCGACGAccaGUCu -3' miRNA: 3'- aCUaCaGCCU--GUGCAAGUUGUU---UAGc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 132558 | 0.71 | 0.999947 |
Target: 5'- -cAUGUCGGACAC-UUCAgGCAAAUUu -3' miRNA: 3'- acUACAGCCUGUGcAAGU-UGUUUAGc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 279184 | 0.7 | 0.999978 |
Target: 5'- cGGUGcCGGAaGCGUUUgggGACAAGUUGa -3' miRNA: 3'- aCUACaGCCUgUGCAAG---UUGUUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 100848 | 0.69 | 0.999998 |
Target: 5'- cUGAcggGUCGGAUGucgauucaaccguCGUucUCGACAAGUCGg -3' miRNA: 3'- -ACUa--CAGCCUGU-------------GCA--AGUUGUUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 226968 | 0.68 | 0.999999 |
Target: 5'- gUGGUGUCGGugGCuccgaAACuGAAUCGg -3' miRNA: 3'- -ACUACAGCCugUGcaag-UUG-UUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 58042 | 0.74 | 0.998906 |
Target: 5'- gGGUGUCGGGCGCGUugUUGugAGAaaaucUCGg -3' miRNA: 3'- aCUACAGCCUGUGCA--AGUugUUU-----AGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 32458 | 0.67 | 1 |
Target: 5'- --uUGUCGGACACGUgacucuuUCuGACAGAa-- -3' miRNA: 3'- acuACAGCCUGUGCA-------AG-UUGUUUagc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 319827 | 0.67 | 1 |
Target: 5'- uUGuUGUCGGACGCcuccUCGGCAAcgUGu -3' miRNA: 3'- -ACuACAGCCUGUGca--AGUUGUUuaGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 246760 | 0.67 | 1 |
Target: 5'- gGAUGUUGGACGaGUUCAGgAcuUCc -3' miRNA: 3'- aCUACAGCCUGUgCAAGUUgUuuAGc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 102849 | 0.72 | 0.999753 |
Target: 5'- cGAcGUCGGACGCuaGUUCGACGAc--- -3' miRNA: 3'- aCUaCAGCCUGUG--CAAGUUGUUuagc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 68816 | 0.67 | 1 |
Target: 5'- aUGAUGUCGGcaagcuCGCGcaaCAGCAGuauuUCGg -3' miRNA: 3'- -ACUACAGCCu-----GUGCaa-GUUGUUu---AGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 70569 | 0.72 | 0.999848 |
Target: 5'- cGAUGUguuuccUGGAUAUGUUCAACcccGUCGa -3' miRNA: 3'- aCUACA------GCCUGUGCAAGUUGuu-UAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 270909 | 0.67 | 1 |
Target: 5'- cUGuUGUCGGAUcuUGUUCGACAGAa-- -3' miRNA: 3'- -ACuACAGCCUGu-GCAAGUUGUUUagc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 171321 | 0.67 | 1 |
Target: 5'- aGAUGcaaauGAUuaagGCGUUCAACAAGUCGu -3' miRNA: 3'- aCUACagc--CUG----UGCAAGUUGUUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 79144 | 0.66 | 1 |
Target: 5'- uUGAUGaaUCGGACGCGUacgcgguacagUgGACGcAGUCa -3' miRNA: 3'- -ACUAC--AGCCUGUGCA-----------AgUUGU-UUAGc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 257951 | 0.71 | 0.999909 |
Target: 5'- cUGGUGUCuGACAUGgUCGACAuGGUCa -3' miRNA: 3'- -ACUACAGcCUGUGCaAGUUGU-UUAGc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 284378 | 0.7 | 0.999984 |
Target: 5'- aGAgg-CGG-CGCGUUCAGCAGgugcAUCGa -3' miRNA: 3'- aCUacaGCCuGUGCAAGUUGUU----UAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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