miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10318 3' -45.6 NC_002687.1 + 4348 0.75 0.996836
Target:  5'- uUGGUagcGUCGGACACGUcaUCGACGAGc-- -3'
miRNA:   3'- -ACUA---CAGCCUGUGCA--AGUUGUUUagc -5'
10318 3' -45.6 NC_002687.1 + 29099 0.71 0.99993
Target:  5'- cGAUGUCcGACACGUugUUGACAAuugCGg -3'
miRNA:   3'- aCUACAGcCUGUGCA--AGUUGUUua-GC- -5'
10318 3' -45.6 NC_002687.1 + 32458 0.67 1
Target:  5'- --uUGUCGGACACGUgacucuuUCuGACAGAa-- -3'
miRNA:   3'- acuACAGCCUGUGCA-------AG-UUGUUUagc -5'
10318 3' -45.6 NC_002687.1 + 39433 0.73 0.999264
Target:  5'- cGAUGUCGGcgcCAUGcUUCAGCAGcUCGc -3'
miRNA:   3'- aCUACAGCCu--GUGC-AAGUUGUUuAGC- -5'
10318 3' -45.6 NC_002687.1 + 55619 0.66 1
Target:  5'- ------gGGACACGUcgCGGCAAAUCu -3'
miRNA:   3'- acuacagCCUGUGCAa-GUUGUUUAGc -5'
10318 3' -45.6 NC_002687.1 + 58042 0.74 0.998906
Target:  5'- gGGUGUCGGGCGCGUugUUGugAGAaaaucUCGg -3'
miRNA:   3'- aCUACAGCCUGUGCA--AGUugUUU-----AGC- -5'
10318 3' -45.6 NC_002687.1 + 68816 0.67 1
Target:  5'- aUGAUGUCGGcaagcuCGCGcaaCAGCAGuauuUCGg -3'
miRNA:   3'- -ACUACAGCCu-----GUGCaa-GUUGUUu---AGC- -5'
10318 3' -45.6 NC_002687.1 + 70569 0.72 0.999848
Target:  5'- cGAUGUguuuccUGGAUAUGUUCAACcccGUCGa -3'
miRNA:   3'- aCUACA------GCCUGUGCAAGUUGuu-UAGC- -5'
10318 3' -45.6 NC_002687.1 + 74807 0.67 1
Target:  5'- cGAUcucgCGGACACuUUCGACGAGUa- -3'
miRNA:   3'- aCUAca--GCCUGUGcAAGUUGUUUAgc -5'
10318 3' -45.6 NC_002687.1 + 79144 0.66 1
Target:  5'- uUGAUGaaUCGGACGCGUacgcgguacagUgGACGcAGUCa -3'
miRNA:   3'- -ACUAC--AGCCUGUGCA-----------AgUUGU-UUAGc -5'
10318 3' -45.6 NC_002687.1 + 81929 0.66 1
Target:  5'- aGAUG-CaGGACugGUUCAAuCGAAaCGu -3'
miRNA:   3'- aCUACaG-CCUGugCAAGUU-GUUUaGC- -5'
10318 3' -45.6 NC_002687.1 + 84560 1.1 0.057682
Target:  5'- gUGAUGUCGGACACGUUCAACAAAUCGu -3'
miRNA:   3'- -ACUACAGCCUGUGCAAGUUGUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 86272 0.66 1
Target:  5'- cGAUGUaGGAgACGgacgUCAcuccgagcgaugACAGGUCGa -3'
miRNA:   3'- aCUACAgCCUgUGCa---AGU------------UGUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 100848 0.69 0.999998
Target:  5'- cUGAcggGUCGGAUGucgauucaaccguCGUucUCGACAAGUCGg -3'
miRNA:   3'- -ACUa--CAGCCUGU-------------GCA--AGUUGUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 102849 0.72 0.999753
Target:  5'- cGAcGUCGGACGCuaGUUCGACGAc--- -3'
miRNA:   3'- aCUaCAGCCUGUG--CAAGUUGUUuagc -5'
10318 3' -45.6 NC_002687.1 + 118752 0.66 1
Target:  5'- cGAcG-CGGAacCACGUUCGACGAccaGUCu -3'
miRNA:   3'- aCUaCaGCCU--GUGCAAGUUGUU---UAGc -5'
10318 3' -45.6 NC_002687.1 + 131329 0.66 1
Target:  5'- uUGAcagCGGuGCugGUUCAGCAGGUgGu -3'
miRNA:   3'- -ACUacaGCC-UGugCAAGUUGUUUAgC- -5'
10318 3' -45.6 NC_002687.1 + 132558 0.71 0.999947
Target:  5'- -cAUGUCGGACAC-UUCAgGCAAAUUu -3'
miRNA:   3'- acUACAGCCUGUGcAAGU-UGUUUAGc -5'
10318 3' -45.6 NC_002687.1 + 133417 0.68 0.999999
Target:  5'- cGAgagUGGACAC-UUCGACGAGUUGu -3'
miRNA:   3'- aCUacaGCCUGUGcAAGUUGUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 146037 0.66 1
Target:  5'- ---cGUCGGACACaaggacauGUUCGACuucUCGc -3'
miRNA:   3'- acuaCAGCCUGUG--------CAAGUUGuuuAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.