Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 86165 | 1.08 | 0.00242 |
Target: 5'- gCGGGACCAGCGGGACCAGUGGGACCAg -3' miRNA: 3'- -GCCCUGGUCGCCCUGGUCACCCUGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 86076 | 1.05 | 0.003812 |
Target: 5'- gCGGGGCCAGCGGGGCCAGUGGGGCCAg -3' miRNA: 3'- -GCCCUGGUCGCCCUGGUCACCCUGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 86210 | 1.01 | 0.007339 |
Target: 5'- aCGGGACCAGCGGGACCAGcGGGACCAg -3' miRNA: 3'- -GCCCUGGUCGCCCUGGUCaCCCUGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 85695 | 0.89 | 0.046656 |
Target: 5'- aCGGGACCcGCGGGACCGaUGGGACCGa -3' miRNA: 3'- -GCCCUGGuCGCCCUGGUcACCCUGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 85863 | 0.85 | 0.090188 |
Target: 5'- gCGGGACCAGCGGGuCCAG-GGaGGCCGc -3' miRNA: 3'- -GCCCUGGUCGCCCuGGUCaCC-CUGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 226579 | 0.82 | 0.123019 |
Target: 5'- uGGGACCGaUGGGACCAaUGGGACCAa -3' miRNA: 3'- gCCCUGGUcGCCCUGGUcACCCUGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 226552 | 0.8 | 0.170537 |
Target: 5'- uGGGACCGcUGGGACCGcUGGGACCGa -3' miRNA: 3'- gCCCUGGUcGCCCUGGUcACCCUGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 85641 | 0.78 | 0.24971 |
Target: 5'- aCGGGACCAGgGaggccuuguGGGCCAGcGGGACCc -3' miRNA: 3'- -GCCCUGGUCgC---------CCUGGUCaCCCUGGu -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 223377 | 0.76 | 0.318321 |
Target: 5'- uGGGAgCAGUGGGAUCAGUGcguggucgaaucgauGGGCCGu -3' miRNA: 3'- gCCCUgGUCGCCCUGGUCAC---------------CCUGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 85808 | 0.74 | 0.371437 |
Target: 5'- gGGGACCGGUGGGACCc--GGcGGCCc -3' miRNA: 3'- gCCCUGGUCGCCCUGGucaCC-CUGGu -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 316201 | 0.74 | 0.378861 |
Target: 5'- uCGGGugCGGCGGGAUCuucGGGugCGg -3' miRNA: 3'- -GCCCugGUCGCCCUGGucaCCCugGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 85668 | 0.72 | 0.492514 |
Target: 5'- aCGGGACCGaCGGGACCcAc-GGGACCc -3' miRNA: 3'- -GCCCUGGUcGCCCUGG-UcaCCCUGGu -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 215264 | 0.72 | 0.518909 |
Target: 5'- gGGGugCAGCGGGucaAUCGGUGGcuCCAu -3' miRNA: 3'- gCCCugGUCGCCC---UGGUCACCcuGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 18638 | 0.72 | 0.518909 |
Target: 5'- aGGGGCaagaGGCGGcGGCgugaguGUGGGACCAg -3' miRNA: 3'- gCCCUGg---UCGCC-CUGgu----CACCCUGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 93238 | 0.71 | 0.545846 |
Target: 5'- uGGGAUCAGCGGaACUucucaGGGACCAa -3' miRNA: 3'- gCCCUGGUCGCCcUGGuca--CCCUGGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 87471 | 0.7 | 0.600892 |
Target: 5'- uCGGGGgC-GUGGGACCGGUGuGGuuCCAu -3' miRNA: 3'- -GCCCUgGuCGCCCUGGUCAC-CCu-GGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 217471 | 0.7 | 0.610163 |
Target: 5'- gGGGACUcGUGGGAgCAcucGUGGGAgCCGg -3' miRNA: 3'- gCCCUGGuCGCCCUgGU---CACCCU-GGU- -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 86183 | 0.7 | 0.619448 |
Target: 5'- gCGGGACCAGCGGGACCAn-------- -3' miRNA: 3'- -GCCCUGGUCGCCCUGGUcacccuggu -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 312211 | 0.7 | 0.623164 |
Target: 5'- gGcGGAgCAGCGGGAUCGGUcaccaagguacucggGGGACUc -3' miRNA: 3'- gC-CCUgGUCGCCCUGGUCA---------------CCCUGGu -5' |
|||||||
10321 | 3' | -62.3 | NC_002687.1 | + | 281794 | 0.7 | 0.628741 |
Target: 5'- uGGGAaCGGCGGGGgCAGgggccgGGGcGCCAg -3' miRNA: 3'- gCCCUgGUCGCCCUgGUCa-----CCC-UGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home